#SLoop idPDBDisc#Non-coreAnnotationChain(s) 1 2 3 4 5 6 71-7
1 HL_5U30_0025U300.46430Pseudoknot geometryBU43U44U45C46C47A48G49cWW
2 HL_6MWN_0046MWN0.32170Pseudoknot geometryBG650C651U652G653G654A655C656cWW
3 HL_2YGH_0012YGH0.14690Pseudoknot geometry (H)AG23A24C25U26G27G28C29cWW
4 HL_2YGH_0042YGH0.14690AG23||||8_554A24||||8_554C25||||8_554U26||||8_554G27||||8_554G28||||8_554C29||||8_554cWW
5 HL_5FJC_0015FJC0.14890Pseudoknot geometryAG23A24C25U26G27G28C29cWW
6 HL_4AOB_0014AOB0.00000Pseudoknot geometryAG23A24C25U26G27G28C29cWW
7 HL_4AOB_0044AOB0.00000AG23||||7_555A24||||7_555C25||||7_555U26||||7_555G27||||7_555G28||||7_555C29||||7_555cWW
8 HL_4KQY_0014KQY0.17880Pseudoknot geometryAG23A24C25U26G27G28C29cWW
9 HL_4KQY_0044KQY0.17880AG23||||4_555A24||||4_555C25||||4_555U26||||4_555G27||||4_555G28||||4_555C29||||4_555cWW
10 HL_3V7E_0013V7E0.25440Pseudoknot geometryCG23A24C25U26G27G28C29cWW
11 HL_3HHN_0093HHN0.45501Pseudoknot geometryEG75G77G78C79A80G81C82cWW
12 HL_3IVK_0043IVK0.46151Pseudoknot geometryMG75G77G78C79A80G81C82cWW
13 HL_4OQU_0024OQU0.62032Pseudoknot geometryAG32C34G35G36A37C38C40cWW
14 HL_4WF9_0144WF90.56821Pseudoknot geometryXG456A458C459C460A461U462C463cWW
15 HL_5J7L_1465J7L0.60701Pseudoknot geometryDAG410A412C413C414A415U416C417cWW
16 HL_4Y4O_1164Y4O0.575712AG410A412C413C414A415C416C417cWW
17 HL_4IOA_0134IOA0.62771Pseudoknot geometry (H)XG423A425C426C427A428C429C430cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACUGGC8
GUGGCAGC2
GGACCAUC2
GGACCACC2
UUUCCAG1
GCUGGAC1
GACGGACAC1
Non-Watson-Crick part of the motif
SequenceCounts
ACUGG8
UGGCAG2
GACCAU2
GACCAC2
UUCCA1
CUGGA1
ACGGACA1

Release history

Release3.223.233.243.253.263.273.283.293.303.313.32
Date2019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-27
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry (11)
  • (4)
  • Pseudoknot geometry (H) (2)
  • Basepair signature
    cWW-R-R-R-R
    Heat map statistics
    Min 0.08 | Avg 0.44 | Max 0.94
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.7141 s