Motif HL_32704.1 Version HL_32704.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 10-14 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7JJU_001 | 7JJU | 0.0000 | 2 | Pseudoknot geometry | A | PLRV_xrRNA | C | 14 | A | 17 | C | 18 | A | 19 | C | 20 | G | 21 | A | 22 | G | 23 | U | 24 | U | 25 | G | 26 | C | 27 | A | 28 | A | 29 | G | 30 | cWW | tWH |
| 2 | HL_7JJU_002 | 7JJU | 0.0309 | 2 | Pseudoknot geometry | B | PLRV_xrRNA | C | 14 | A | 17 | C | 18 | A | 19 | C | 20 | G | 21 | A | 22 | G | 23 | U | 24 | U | 25 | G | 26 | C | 27 | A | 28 | A | 29 | G | 30 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUACACGAGUUGCAAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUACACGAGUUGCAA | 2 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (2)
- Basepair signature
- cWW-F-tWH-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.03 | Avg 0.02 | Max 0.03
Coloring options: