Motif HL_35894.3 Version HL_35894.3 of this group appears in releases 3.48 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_4KJI_001	4KJI	0.7601	2	C	RsmZ-2	G	5	A	6	G	8	G	9	A	10	C	12	cWW
2	HL_5M3H_001	5M3H	0.0000	0	V	RNA 5'-pAGUAGUAACAAGAGGG	U	3	A	4	G	5	U	6	A	7	A	8	cWW
3	HL_4WSB_001	4WSB	0.0641	0	V	Influenza A polymerase vRNA promoter 5' end	U	3	A	4	G	5	U	6	A	7	A	8	cWW
4	HL_5FMZ_001	5FMZ	0.0985	0	H	RNA (12-mer)	U	3	A	4	G	5	U	6	A	7	A	8	cWW
5	HL_4WRT_001	4WRT	0.0823	0	V	Influenza virus polymerase vRNA promoter 5' end	U	3	A	4	G	5	U	6	A	7	A	8	cWW	ncSW
6	HL_5J7L_140	5J7L	0.9007	0	DA	LSU rRNA	C	225	A	226	A	227	C	228	C	229	G	230	cWW	tSH

3D structures

Complete motif including flanking bases

Sequence	Counts
UAGUAA	4
GAAGGAUC	1
CAACCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGUA	4
AAGGAU	1
AACC	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (6)
Basepair signature: cWW-cSW-R-R
Heat map statistics: Min 0.06 | Avg 0.46 | Max 0.96

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