Motif HL_35894.3 Version HL_35894.3 of this group appears in releases 3.48 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KJI_001 | 4KJI | 0.7601 | 2 | C | RsmZ-2 | G | 5 | A | 6 | G | 8 | G | 9 | A | 10 | C | 12 | cWW | ||
| 2 | HL_5M3H_001 | 5M3H | 0.0000 | 0 | V | RNA 5'-pAGUAGUAACAAGAGGG | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ||
| 3 | HL_4WSB_001 | 4WSB | 0.0641 | 0 | V | Influenza A polymerase vRNA promoter 5' end | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ||
| 4 | HL_5FMZ_001 | 5FMZ | 0.0985 | 0 | H | RNA (12-mer) | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ||
| 5 | HL_4WRT_001 | 4WRT | 0.0823 | 0 | V | Influenza virus polymerase vRNA promoter 5' end | U | 3 | A | 4 | G | 5 | U | 6 | A | 7 | A | 8 | cWW | ncSW | |
| 6 | HL_5J7L_140 | 5J7L | 0.9007 | 0 | DA | LSU rRNA | C | 225 | A | 226 | A | 227 | C | 228 | C | 229 | G | 230 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUAA | 4 |
| GAAGGAUC | 1 |
| CAACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUA | 4 |
| AAGGAU | 1 |
| AACC | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: