Motif HL_36421.5 Version HL_36421.5 of this group appears in releases 3.54 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_062 | 4V9F | 0.3175 | 0 | 0 | LSU rRNA | A | 2506 | G | 2507 | C | 2508 | A | 2509 | C | 2510 | A | 2511 | U | 2512 | A | 2513 | U | 2514 | cWW | tSH |
| 2 | HL_4WF9_056 | 4WF9 | 0.1533 | 0 | X | LSU rRNA | A | 2498 | G | 2499 | U | 2500 | U | 2501 | C | 2502 | A | 2503 | C | 2504 | A | 2505 | U | 2506 | cWW | tSH |
| 3 | HL_7A0S_059 | 7A0S | 0.1589 | 0 | X | LSU rRNA | A | 2450 | G | 2451 | U | 2452 | C | 2453 | C | 2454 | A | 2455 | U | 2456 | A | 2457 | U | 2458 | cWW | tSH |
| 4 | HL_5J7L_193 | 5J7L | 0.0000 | 0 | DA | LSU rRNA | A | 2471 | G | 2472 | U | 2473 | U | 2474 | C | 2475 | A | 2476 | U | 2477 | A | 2478 | U | 2479 | cWW | tSH |
| 5 | HL_7RQB_060 | 7RQB | 0.1509 | 0 | 1A | LSU rRNA | C | 2471 | G | 2472 | U | 2473 | C | 2474 | C | 2475 | A | 2476 | C | 2477 | A | 2478 | G | 2479 | cWW | tSH |
| 6 | HL_5TBW_061 | 5TBW | 0.3730 | 0 | 1 | LSU rRNA | C | 2840 | G | 2841 | U | 2842 | U | 2843 | C | 2844 | A | 2845 | U | 2846 | A | 2847 | G | 2848 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCACAUAU | 1 |
| AGUUCACAU | 1 |
| AGUCCAUAU | 1 |
| AGUUCAUAU | 1 |
| CGUCCACAG | 1 |
| CGUUCAUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUCAUA | 2 |
| GCACAUA | 1 |
| GUUCACA | 1 |
| GUCCAUA | 1 |
| GUCCACA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-tSH-R-R-R-R-R
- Heat map statistics
- Min 0.14 | Avg 0.24 | Max 0.50
Coloring options: