Motif HL_36559.1 Version HL_36559.1 of this group appears in releases 3.15 to 3.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2DER_005 | 2DER | 0.7027 | 1 | D | tRNA | C | 31 | C | 32 | U | 33 | U | 35 | C | 36 | A | 37 | C | 38 | G | 39 | cWW | ||
| 2 | HL_4R4V_001 | 4R4V | 0.0000 | 1 | Varkud satellite (VS) ribozyme helix 1 | A | VS ribozyme RNA | C | 626 | G | 627 | U | 628 | G | 630 | U | 631 | C | 632 | G | 633 | G | 634 | cWW | tSH |
| 3 | HL_4R4V_005 | 4R4V | 0.0000 | 1 | Varkud satellite (VS) ribozyme helix 1 | A | VS ribozyme RNA | C | 626||||7_556 | G | 627||||7_556 | U | 628||||7_556 | G | 630||||7_556 | U | 631||||7_556 | C | 632||||7_556 | G | 633||||7_556 | G | 634||||7_556 | cWW | tSH |
| 4 | HL_6GSJ_220 | 6GSJ | 0.6046 | 1 | 3L | tRNA | C | 31 | U | 32 | U | 33 | G | 35 | U | 36 | A | 37 | A | 38 | G | 39 | ncWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUCGUCGG | 2 |
| CCUUUCACG | 1 |
| CUUGGUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUCGUCG | 2 |
| CUUUCAC | 1 |
| UUGGUAA | 1 |
- Annotations
-
- Varkud satellite (VS) ribozyme helix 1 (2)
- Basepair signature
- cWW-tSH-R-R-R-R
- Heat map statistics
- Min 0.60 | Avg 0.43 | Max 0.80
Coloring options: