HL_37020.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	1-7	2-5	2-6
1	HL_3U5H_063	3U5H	0.8194	1		5	LSU rRNA	A	2897	C	2899	A	2900	G	2901	A	2902	A	2903	U	2904	cWW
2	HL_4CUV_063	4CUV	0.8284	1		1	LSU rRNA	A	2897	C	2899	A	2900	G	2901	A	2902	A	2903	U	2904	cWW
3	HL_1VX6_062	1VX6	0.7883	1		A	LSU rRNA	C	3256	C	3258	A	3259	G	3260	A	3261	A	3262	G	3263	cWW
4	HL_4A1B_062	4A1B	0.7408	1		1	LSU rRNA	A	2885	C	2887	A	2888	G	2889	A	2890	A	2891	U	2892	cWW
5	HL_2QBG_063	2QBG	0.7598	1		B	LSU rRNA	U	2528	A	2530	A	2531	G	2532	U	2533	A	2534	G	2535	cWW
6	HL_4QCN_059	4QCN	0.7280	1		A	LSU rRNA	U	2540	A	2542	A	2543	G	2544	A	2545	A	2546	G	2547	cWW
7	HL_4IOA_060	4IOA	0.7474	1	GNRA variation (H)	X	LSU rRNA	U	2507	A	2509	A	2510	G	2511	A	2512	A	2513	G	2514	cWW
8	HL_1S72_063	1S72	0.7880	1	GNRA variation (H)	0	LSU rRNA	U	2563	C	2565	A	2566	G	2567	A	2568	A	2569	G	2570	cWW
9	HL_1VW3_052	1VW3	0.7741	2		A	LSU rRNA	U	2794	U	2797	A	2798	A	2799	A	2800	A	2801	G	2802	cWW
10	HL_4CUV_064	4CUV	0.1287	0		1	LSU rRNA	U	2920	U	2921	G	2922	U	2923	U	2924	C	2925	A	2926	cWW
11	HL_3U5H_064	3U5H	0.1174	0		5	LSU rRNA	U	2920	U	2921	G	2922	U	2923	U	2924	C	2925	A	2926	cWW
12	HL_1VX6_063	1VX6	0.0000	0		A	LSU rRNA	U	3279	U	3280	G	3281	U	3282	U	3283	C	3284	A	3285	cWW
13	HL_4A1B_063	4A1B	0.1200	0		1	LSU rRNA	U	2908	U	2909	G	2910	U	2911	U	2912	C	2913	A	2914	cWW
14	HL_4QCN_060	4QCN	0.1589	0		A	LSU rRNA	C	2563	U	2564	G	2565	U	2566	U	2567	C	2568	G	2569	cWW
15	HL_4IOA_061	4IOA	0.1615	0	LSU A loop (H)	X	LSU rRNA	C	2530	U	2531	G	2532	U	2533	U	2534	C	2535	G	2536	cWW
16	HL_2QBG_064	2QBG	0.1554	0		B	LSU rRNA	C	2551	U	2552	G	2553	U	2554	U	2555	C	2556	G	2557	cWW
17	HL_1VW3_053	1VW3	0.2167	0		A	LSU rRNA	C	2818	U	2819	G	2820	U	2821	U	2822	C	2823	G	2824	cWW
18	HL_4QK8_002	4QK8	0.6331	0		A	cyclic di-AMP riboswitch	G	53	U	54	G	55	A	56	A	57	G	58	C	59	ncWW	ntWH
19	HL_1FJG_002	1FJG	0.6345	0		A	SSU rRNA	G	80	U	81	U	82	U	83	U	84	A	88	C	89	cWW		ntSH
20	HL_1VX2_035	1VX2	0.8392	0		5	tRNA	U	32	U	33	G	34	A	35	A	36	A	37	A	38	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUGUUCA	4
CUGUUCG	4
AGCAGAAU	3
UGAAGAAG	2
CGCAGAAG	1
UGAAGUAG	1
UGCAGAAG	1
UUGUAAAAG	1
GUGAAGC	1
GUUUUAC	1
UUGAAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGUUC	8
GCAGAA	5
GAAGAA	2
GAAGUA	1
UGUAAAA	1
UGAAG	1
UUUUA	1
UGAAA	1

Release history

Release	1.17
Date	2014-09-06
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in HL_37020.2	Only in the parent motif
HL_37020.1 Compare	HL_1VW3_053, HL_1VW3_052, HL_4CUV_064, HL_2QBG_064, HL_1S72_063, HL_4CUV_063, HL_4A1B_063, HL_4A1B_062, HL_1VX6_063, HL_2QBG_063, HL_1VX2_035, HL_1FJG_002, HL_3U5H_064, HL_4IOA_060, HL_4IOA_061, HL_1VX6_062, HL_3U5H_063	HL_4QCN_060, HL_4QK8_002, HL_4QCN_059	HL_4NVV_059, HL_4NVV_060

Children motifs

Child motif	Common motif instances	Only in HL_37020.2	Only in the child motif
HL_71179.1 Compare	HL_1VW3_053, HL_4QK8_002, HL_4CUV_064, HL_4QCN_060, HL_4A1B_063, HL_2QBG_064, HL_1VX6_063, HL_1FJG_002, HL_3U5H_064, HL_4IOA_061	HL_4CUV_063, HL_1VW3_052, HL_1VX2_035, HL_1S72_063, HL_4A1B_062, HL_4QCN_059, HL_2QBG_063, HL_4IOA_060, HL_1VX6_062, HL_3U5H_063	HL_2GDI_001, HL_2GDI_003, HL_4TZX_002, HL_1FJG_014, HL_4LX6_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014
HL_90506.1 Compare	HL_4CUV_063, HL_1VW3_052, HL_1S72_063, HL_4A1B_062, HL_4QCN_059, HL_2QBG_063, HL_4IOA_060, HL_1VX6_062, HL_3U5H_063	HL_1VW3_053, HL_4QK8_002, HL_4CUV_064, HL_4QCN_060, HL_4A1B_063, HL_2QBG_064, HL_1VX6_063, HL_1VX2_035, HL_1FJG_002, HL_3U5H_064, HL_4IOA_061

Motif HL_37020.2 Version HL_37020.2 of this group appears in releases 1.17 to 1.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_37020.2 Version HL_37020.2 of this group appears in releases 1.17 to 1.17

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Csv

Json