HL_71179.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	1-7	2-5	2-6
1	HL_2GDI_003	2GDI	0.7610	0		Y	TPP riboswitch (THI element)	C	27	U	28	G	29	C	30	G	31	U	32	G	33	cWW		ntWW
2	HL_2GDI_001	2GDI	0.7523	0		X	TPP riboswitch (THI element)	C	27	U	28	G	29	C	30	G	31	U	32	G	33	cWW		tWW
3	HL_2AW7_014	2AW7	0.7478	0		A	SSU rRNA	G	617	C	618	U	619	C	620	A	621	A	622	C	623	cWW		ntWH
4	HL_1FJG_014	1FJG	0.7722	0	GNRA-like with tWH (H)	A	SSU rRNA	G	617	C	618	U	619	C	620	A	621	A	622	C	623	cWW		ntWH
5	HL_3AL0_002	3AL0	0.8424	2		E	tRNA	A	31	C	32	C	34	U	35	G	36	A	38	U	39	cWW		cWW
6	HL_3FO4_002	3FO4	0.8813	1		A	Purine riboswitch	G	46	U	47	U	49	C	50	U	51	A	52	C	53	cWW	ntWH
7	HL_4TZX_002	4TZX	0.8554	1	Purine riboswitch (H)	X	Purine riboswitch	G	46	U	47	U	49	C	50	U	51	A	52	C	53	cWW	ntWH
8	HL_1Y26_002	1Y26	0.8587	1	Purine riboswitch	X	Purine riboswitch	G	46	U	47	U	49	C	50	U	51	A	52	C	53	cWW	ntWH
9	HL_4LX6_002	4LX6	0.8250	1	Purine riboswitch	A	Purine riboswitch	G	46	C	47	U	49	C	50	C	51	A	52	C	53	cWW
10	HL_3LA5_002	3LA5	0.7819	1	Purine riboswitch	A	Purine riboswitch	G	46	C	47	U	49	C	50	C	51	A	52	C	53	cWW
11	HL_4QK8_002	4QK8	0.6331	0		A	cyclic di-AMP riboswitch	G	53	U	54	G	55	A	56	A	57	G	58	C	59	ncWW	ntWH
12	HL_1FJG_002	1FJG	0.6345	0		A	SSU rRNA	G	80	U	81	U	82	U	83	U	84	A	88	C	89	cWW		ntSH
13	HL_1VW3_053	1VW3	0.2167	0		A	LSU rRNA	C	2818	U	2819	G	2820	U	2821	U	2822	C	2823	G	2824	cWW
14	HL_2QBG_064	2QBG	0.1554	0		B	LSU rRNA	C	2551	U	2552	G	2553	U	2554	U	2555	C	2556	G	2557	cWW
15	HL_4IOA_061	4IOA	0.1615	0		X	LSU rRNA	C	2530	U	2531	G	2532	U	2533	U	2534	C	2535	G	2536	cWW
16	HL_4QCN_060	4QCN	0.1589	0		A	LSU rRNA	C	2563	U	2564	G	2565	U	2566	U	2567	C	2568	G	2569	cWW
17	HL_4A1B_063	4A1B	0.1200	0		1	LSU rRNA	U	2908	U	2909	G	2910	U	2911	U	2912	C	2913	A	2914	cWW
18	HL_1VX6_063	1VX6	0.0000	0		A	LSU rRNA	U	3279	U	3280	G	3281	U	3282	U	3283	C	3284	A	3285	cWW
19	HL_3U5H_064	3U5H	0.1174	0		5	LSU rRNA	U	2920	U	2921	G	2922	U	2923	U	2924	C	2925	A	2926	cWW
20	HL_4CUV_064	4CUV	0.1287	0		1	LSU rRNA	U	2920	U	2921	G	2922	U	2923	U	2924	C	2925	A	2926	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGUUCG	4
UUGUUCA	4
GUUUCUAC	3
CUGCGUG	2
GCUCAAC	2
GCUUCCAC	2
ACUCUGGAU	1
GUGAAGC	1
GUUUUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGUUC	8
UUUCUA	3
UGCGU	2
CUCAA	2
CUUCCA	2
CUCUGGA	1
UGAAG	1
UUUUA	1

Release history

Release	1.18
Date	2014-10-09
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in HL_71179.1	Only in the parent motif
HL_37020.2 Compare	HL_1VW3_053, HL_4QK8_002, HL_4CUV_064, HL_4QCN_060, HL_4A1B_063, HL_2QBG_064, HL_1VX6_063, HL_1FJG_002, HL_3U5H_064, HL_4IOA_061	HL_2GDI_001, HL_2GDI_003, HL_4TZX_002, HL_1FJG_014, HL_4LX6_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014	HL_4CUV_063, HL_1VW3_052, HL_1VX2_035, HL_1S72_063, HL_4A1B_062, HL_4QCN_059, HL_2QBG_063, HL_4IOA_060, HL_1VX6_062, HL_3U5H_063
HL_89482.2 Compare	HL_2GDI_001, HL_2GDI_003, HL_1FJG_014, HL_4LX6_002, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014	HL_1VW3_053, HL_4QK8_002, HL_4CUV_064, HL_4QCN_060, HL_4TZX_002, HL_4A1B_063, HL_2QBG_064, HL_1VX6_063, HL_1FJG_002, HL_3U5H_064, HL_4IOA_061	HL_3QSY_002

Children motifs

This motif has no children motifs.

Motif HL_71179.1 Version HL_71179.1 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_71179.1 Version HL_71179.1 of this group appears in releases 1.18 to 1.18

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Csv

Json