Motif HL_39334.3 Version HL_39334.3 of this group appears in releases 3.12 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6	5-7
1	HL_4V9F_024	4V9F	0.2240	3	0	LSU rRNA	U	837	C	838	C	839	A	841	C	842	A	843	A	846	cWW	tSW	cWS
2	HL_4IOA_022	4IOA	0.2114	3	X	LSU rRNA	U	757	G	758	C	759	G	761	A	762	A	763	A	766	cWW	tSW	ncWS
3	HL_4WF9_023	4WF9	0.0000	3	X	LSU rRNA	C	789	G	790	U	791	G	793	A	794	A	795	G	798	cWW	tSW	cWS
4	HL_4Y4O_125	4Y4O	0.2138	3	2A	LSU rRNA	G	744	G	745	A	746	G	748	C	749	A	750	C	753	cWW	tSW	cWS
5	HL_5TBW_020	5TBW	0.3160	3	1	LSU rRNA	A	876	C	877	G	878	G	880	C	881	A	882	U	885	cWW	tSW	ncWS

3D structures

Complete motif including flanking bases

Sequence	Counts
UCCUACAAUA	1
UGCUGAAACA	1
CGUUGAAAAG	1
GGAUGCAAAC	1
ACGUGCAAAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCUACAAU	1
GCUGAAAC	1
GUUGAAAA	1
GAUGCAAA	1
CGUGCAAA	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-tSW-R-R
Heat map statistics: Min 0.21 | Avg 0.22 | Max 0.37

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