Motif HL_39942.2 Version HL_39942.2 of this group appears in releases 1.1 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1S72_063 | 1S72 | 0.1873 | 1 | 0 | LSU rRNA | U | 2563 | C | 2565 | A | 2566 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW |
| 2 | HL_4IOA_060 | 4IOA | 0.1353 | 1 | X | LSU rRNA | U | 2507 | A | 2509 | A | 2510 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW |
| 3 | HL_3V2F_059 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | A | 2533 | A | 2534 | G | 2535 | cWW |
| 4 | HL_2QBG_063 | 2QBG | 0.1356 | 1 | B | 23S rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | U | 2533 | A | 2534 | G | 2535 | cWW |
| 5 | HL_4A1B_062 | 4A1B | 0.2714 | 1 | 1 | 26S RRNA | A | 2885 | C | 2887 | A | 2888 | G | 2889 | A | 2890 | A | 2891 | U | 2892 | cWW |
| 6 | HL_3U5H_063 | 3U5H | 0.5003 | 1 | 5 | 25S rRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGAAG | 2 |
| AGCAGAAU | 2 |
| UGCAGAAG | 1 |
| UGAAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGAA | 3 |
| GAAGAA | 2 |
| GAAGUA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_39942.2 | Only in the parent motif |
|---|---|---|---|
| HL_39942.1 Compare | HL_4A1B_062, HL_1S72_063, HL_3V2F_059, HL_2QBG_063, HL_3U5H_063 | HL_4IOA_060 | HL_2ZJR_059 |
Children motifs
| Child motif | Common motif instances | Only in HL_39942.2 | Only in the child motif |
|---|---|---|---|
| HL_39942.3 Compare | HL_4A1B_062, HL_4IOA_060, HL_1S72_063, HL_2QBG_063, HL_3U5H_063 | HL_3V2F_059 | HL_4NVV_059, HL_1VW3_052 |
- Annotations
-
- (6)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.14 | Avg 0.26 | Max 0.53
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