Motif HL_40210.3 Version HL_40210.3 of this group appears in releases 3.87 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_7A0S_058 | 7A0S | 0.5731 | 5 | X | LSU rRNA | C | 2383 | G | 2384 | A | 2390 | A | 2391 | G | 2392 | cWW | tSH | |
2 | HL_4WF9_055 | 4WF9 | 0.5184 | 5 | X | LSU rRNA | C | 2431 | G | 2432 | A | 2438 | A | 2439 | G | 2440 | cWW | tSH | |
3 | HL_8VTW_058 | 8VTW | 0.4891 | 5 | 1A | LSU rRNA | C | 2404 | G | 2405 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH | |
4 | HL_5J7L_192 | 5J7L | 0.4632 | 5 | DA | LSU rRNA | U | 2404 | G | 2405 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH | |
5 | HL_7A0S_005 | 7A0S | 0.3991 | 1 | X | LSU rRNA | C | 146 | G | 147 | A | 149 | A | 150 | G | 151 | cWW | tSH | |
6 | HL_3IGI_004 | 3IGI | 0.3498 | 2 | A | Group IIC intron | G | 135 | G | 136 | C | 139 | A | 140 | C | 141 | cWW | tSH | |
7 | HL_6ASO_001 | 6ASO | 0.2701 | 2 | I | U6 snRNA | U | 70 | G | 71 | U | 74 | A | 75 | A | 76 | cWW | tSH | |
8 | HL_8DP3_003 | 8DP3 | 0.0000 | 1 | R | RNA (90-MER) | U | 62 | C | 63 | C | 65 | C | 66 | G | 67 | cWW | ntSH | |
9 | HL_4LFB_002 | 4LFB | 0.2810 | 2 | A | SSU rRNA | G | 80 | U | 81 | U | 84 | A | 88 | C | 89 | cWW | ntSH | |
10 | HL_4QLM_001 | 4QLM | 0.3297 | 1 | GNRA | A | cyclic di-AMP riboswitch | C | 54 | G | 55 | A | 57 | A | 58 | G | 59 | cWW | tSH |
11 | HL_7Z4D_003 | 7Z4D | 0.4227 | 1 | A | sgRNA | U | 72 | G | 73 | A | 75 | A | 76 | A | 77 | cWW | ntSH | |
12 | HL_4V9F_022 | 4V9F | 0.3355 | 1 | Other HL | 0 | LSU rRNA | U | 733 | U | 734 | A | 736 | A | 737 | G | 738 | cWW | ntSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGUGUGGAAG | 2 |
CGCAUGGAAG | 1 |
UGAAUGGAAG | 1 |
CGCAAG | 1 |
GGAACAC | 1 |
UGCAUAA | 1 |
UCACCG | 1 |
GUUUUAC | 1 |
CGAAAG | 1 |
UGAAAA | 1 |
UUCAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUGUGGAA | 2 |
GAAA | 2 |
GCAUGGAA | 1 |
GAAUGGAA | 1 |
GCAA | 1 |
GAACA | 1 |
GCAUA | 1 |
CACC | 1 |
UUUUA | 1 |
UCAA | 1 |
Release history
Release | 3.87 |
---|---|
Date | 2024-08-14 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA (1)
- Other HL (1)
- Basepair signature
- cWW-tSH-F
- Heat map statistics
- Min 0.13 | Avg 0.36 | Max 0.61
Coloring options: