Motif HL_40310.1 Version HL_40310.1 of this group appears in releases 3.77 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3HJW_001 | 3HJW | 0.0000 | 4 | D | RNA (58-MER) | U | 23 | G | 24 | A | 25 | A | 29 | G | 31 | A | 32 | G | 33 | cWW | tSH | tHS | |
| 2 | HL_3IVN_002 | 3IVN | 0.9686 | 1 | A | Purine riboswitch | G | 37 | U | 38 | G | 39 | C | 41 | U | 42 | A | 43 | C | 44 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUCAAUGAG | 1 |
| GUGUCUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUCAAUGA | 1 |
| UGUCUA | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tSH-F-F-F
- Heat map statistics
- Min 0.97 | Avg 0.48 | Max 0.97
Coloring options: