Motif HL_41237.1 Version HL_41237.1 of this group appears in releases 0.1 to 0.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O58_001 | 3O58 | 0.1140 | 1 | 1 | 25S ribosomal RNA | U | 38 | A | 39 | G | 41 | C | 42 | A | 43 | U | 44 | A | 45 | cWW | ntSH | |
| 2 | HL_3PYO_006 | 3PYO | 0.0000 | 1 | A | 23S ribosomal RNA | G | 194 | A | 195 | A | 197 | C | 198 | A | 199 | U | 200 | C | 201 | cWW | ntSH | |
| 3 | HL_2ZJR_006 | 2ZJR | 0.1107 | 1 | X | LSU rRNA | G | 171 | A | 172 | A | 174 | C | 175 | A | 176 | U | 177 | C | 178 | cWW | ntSH | |
| 4 | HL_2QBG_008 | 2QBG | 0.2110 | 1 | B | 23S rRNA | G | 194 | A | 195 | A | 197 | C | 198 | A | 199 | U | 200 | C | 201 | cWW | ntSH | |
| 5 | HL_1S72_006 | 1S72 | 0.2947 | 1 | 0 | LSU rRNA | G | 164 | A | 165 | A | 167 | C | 168 | A | 169 | U | 170 | C | 171 | cWW | tSH | |
| 6 | HL_3DIR_003 | 3DIR | 0.7846 | 0 | A | RNA (174-MER) | G | 124 | G | 125 | A | 126 | A | 127 | U | 128 | A | 129 | C | 130 | cWW | ntSH | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAUC | 4 |
| UAAGCAUA | 1 |
| GGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACAU | 4 |
| AAGCAU | 1 |
| GAAUA | 1 |
Release history
| Release | 0.1 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_41237.1 | Only in the child motif |
|---|---|---|---|
| HL_41237.2 Compare | HL_1S72_006, HL_3O58_001, HL_3PYO_006, HL_2ZJR_006, HL_2QBG_008 | HL_3DIR_003 | HL_2QBG_009 |
| HL_04630.1 Compare | HL_3DIR_003 | HL_1S72_006, HL_3O58_001, HL_3PYO_006, HL_2ZJR_006, HL_2QBG_008 |
Coloring options: