Motif HL_41464.1 Version HL_41464.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6DB9_002 | 6DB9 | 0.7869 | 2 | R | RNA (60-MER) | G | 36 | G | 37 | U | 38 | G | 39 | A | 41 | U | 42 | A | 44 | C | 45 | cWW | ntsS | cSs | |
| 2 | HL_3IGI_010 | 3IGI | 0.0000 | 2 | A | Group IIC intron | C | 305 | U | 306 | G | 307 | U | 308 | C | 310 | C | 312 | A | 313 | G | 314 | ncWW | ncWS | ||
| 3 | HL_8P9A_127 | 8P9A | 0.5990 | 1 | AR | LSU rRNA | G | 686 | U | 687 | G | 688 | A | 690 | A | 691 | A | 692 | A | 693 | C | 694 | cWW | ncSW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUGAAUGAC | 1 |
| CUGUUCGCAG | 1 |
| GUGUAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGAAUGA | 1 |
| UGUUCGCA | 1 |
| UGUAAAA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.60 | Avg 0.52 | Max 0.96
Coloring options: