Motif HL_43357.2 Version HL_43357.2 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3T4B_003 | 3T4B | 0.5587 | 0 | A | HCV IRES pseudoknot domain plus crystallization module | C | 304 | U | 305 | U | 306 | G | 307 | C | 308 | G | 309 | A | 310 | G | 311 | U | 312 | G | 313 | cWW | ncWw |
| 2 | HL_2JLT_001 | 2JLT | 0.0000 | 0 | A | R06 | G | 5 | G | 6 | U | 7 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW |
| 3 | HL_1VW3_047 | 1VW3 | 0.4506 | 0 | A | 21S ribosomal RNA | A | 2589 | U | 2590 | A | 2591 | U | 2592 | A | 2593 | A | 2594 | U | 2595 | G | 2596 | G | 2597 | U | 2598 | cWW | ncWW |
| 4 | HL_2A64_006 | 2A64 | 0.8937 | 2 | A | ribonuclease P RNA | C | 313 | G | 314 | G | 317 | C | 318 | A | 319 | U | 320 | G | 321 | C | 322 | A | 323 | G | 324 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUGCGAGUG | 1 |
| GGUCCCAGAC | 1 |
| AUAUAAUGGU | 1 |
| CGGCGCAUGCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGCGAGU | 1 |
| GUCCCAGA | 1 |
| UAUAAUGG | 1 |
| GGCGCAUGCA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_43357.2 | Only in the parent motif |
|---|---|---|---|
| HL_43357.1 Compare | HL_2JLT_001, HL_1VW3_047, HL_3T4B_003 | HL_2A64_006 | HL_3SUX_001 |
| HL_64371.3 Compare | HL_2A64_006 | HL_2JLT_001, HL_1VW3_047, HL_3T4B_003 | HL_3DHS_005, HL_3IVK_006 |
Children motifs
| Child motif | Common motif instances | Only in HL_43357.2 | Only in the child motif |
|---|---|---|---|
| HL_43357.3 Compare | HL_2JLT_001, HL_1VW3_047, HL_2A64_006, HL_3T4B_003 | HL_4W21_060 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-R-R-R-R-R
- Heat map statistics
- Min 0.45 | Avg 0.53 | Max 0.89
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