Motif HL_46794.2 Version HL_46794.2 of this group appears in releases 0.3 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 2-11 | 4-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1Y0Q_008 | 1Y0Q | 0.2815 | 0 | A | Group I catalytic intron | G | 224 | A | 225 | G | 226 | U | 227 | A | 228 | A | 229 | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | cWW | ncWW | ntSH | ||
| 2 | HL_2XZM_014 | 2XZM | 0.0000 | 0 | A | 18S RRNA | G | 514 | U | 515 | G | 516 | U | 517 | A | 518 | A | 519 | A | 520 | U | 521 | C | 522 | U | 523 | C | 524 | cWW | ncWW | ncWW | ||
| 3 | HL_2XZM_026 | 2XZM | 0.9796 | 1 | A | 18S RRNA | G | 1209 | A | 1210 | U | 1211 | U | 1212 | G | 1213 | A | 1214 | A | 1216 | G | 1217 | C | 1218 | U | 1219 | C | 1220 | cWW | ncWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGUAACGAAC | 1 |
| GUGUAAAUCUC | 1 |
| GAUUGAGAGCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUAACGAA | 1 |
| UGUAAAUCU | 1 |
| AUUGAGAGCU | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_46794.2 | Only in the parent motif |
|---|---|---|---|
| HL_46794.1 Compare | HL_2XZM_014, HL_1Y0Q_008 | HL_2XZM_026 | HL_3O58_028 |
| HL_44662.1 Compare | HL_2XZM_026 | HL_2XZM_014, HL_1Y0Q_008 | HL_2CZJ_005, HL_2CZJ_001, HL_3P49_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_46794.2 | Only in the child motif |
|---|---|---|---|
| HL_33875.1 Compare | HL_1Y0Q_008 | HL_2XZM_026, HL_2XZM_014 | HL_1FJG_030, HL_4BPP_014 |
- Annotations
- Basepair signature
- cWW-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.50 | Max 1.00
Coloring options: