Motif HL_44662.1 Version HL_44662.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-6 | 4-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3P49_004 | 3P49 | 0.0000 | 1 | A | Glycine riboswitch | C | 122 | U | 123 | A | 124 | A | 125 | U | 126 | U | 128 | U | 129 | A | 130 | G | 131 | cWW | ncWS | |||
| 2 | HL_2CZJ_005 | 2CZJ | 0.7708 | 1 | F | tmRNA (63-MER) | G | 23 | G | 24 | G | 25 | U | 26 | U | 27 | G | 29 | C | 30 | C | 31 | U | 32 | cWW | ncWW | ncWW | ncWW | |
| 3 | HL_2XZM_026 | 2XZM | 0.9146 | 3 | A | 18S RRNA | G | 1209 | A | 1210 | U | 1211 | U | 1212 | G | 1213 | A | 1216 | C | 1218 | U | 1219 | C | 1220 | cWW | ncWW | |||
| 4 | HL_2CZJ_001 | 2CZJ | 0.9150 | 1 | B | tmRNA (63-MER) | G | 23 | G | 24 | G | 25 | U | 26 | U | 27 | G | 29 | C | 30 | C | 31 | U | 32 | cWW | ncWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGUUCGCCU | 2 |
| CUAAUUUUAG | 1 |
| GAUUGAGAGCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUUCGCC | 2 |
| UAAUUUUA | 1 |
| AUUGAGAGCU | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_44662.1 | Only in the child motif |
|---|---|---|---|
| HL_66174.1 Compare | HL_2CZJ_001 | HL_2XZM_026, HL_2CZJ_005, HL_3P49_004 | HL_1Y26_003, HL_3RKF_003, HL_3FO4_003, HL_3LA5_003 |
| HL_70459.1 Compare | HL_3P49_004 | HL_2XZM_026, HL_2CZJ_005, HL_2CZJ_001 | HL_3RG5_002 |
| HL_46794.2 Compare | HL_2XZM_026 | HL_2CZJ_005, HL_2CZJ_001, HL_3P49_004 | HL_2XZM_014, HL_1Y0Q_008 |
Coloring options: