Motif HL_33875.1 Version HL_33875.1 of this group appears in releases 1.5 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-8 | 3-9 | 4-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4BPP_014 | 4BPP | 0.2771 | 0 | A | 18S RRNA | G | 514 | U | 515 | G | 516 | U | 517 | A | 518 | A | 519 | A | 520 | U | 521 | C | 522 | U | 523 | C | 524 | cWW | cwW | ntSH | ||
| 2 | HL_1Y0Q_008 | 1Y0Q | 0.0000 | 0 | A | Group I catalytic intron | G | 224 | A | 225 | G | 226 | U | 227 | A | 228 | A | 229 | C | 230 | G | 231 | A | 232 | A | 233 | C | 234 | cWW | ncwW | ntSHa | ||
| 3 | HL_1FJG_030 | 1FJG | 0.7896 | 1 | A | SSU rRNA | G | 1356 | A | 1357 | U | 1358 | C | 1359 | A | 1360 | G | 1361 | C | 1361|||A | C | 1362 | A | 1363 | G | 1365 | C | 1366 | cWW | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGUAAAUCUC | 1 |
| GAGUAACGAAC | 1 |
| GAUCAGCCAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUAAAUCU | 1 |
| AGUAACGAA | 1 |
| AUCAGCCAUG | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_33875.1 | Only in the parent motif |
|---|---|---|---|
| HL_46794.2 Compare | HL_1Y0Q_008 | HL_1FJG_030, HL_4BPP_014 | HL_2XZM_026, HL_2XZM_014 |
| HL_83053.1 Compare | HL_1FJG_030 | HL_4BPP_014, HL_1Y0Q_008 |
Children motifs
| Child motif | Common motif instances | Only in HL_33875.1 | Only in the child motif |
|---|---|---|---|
| HL_55035.1 Compare | HL_4BPP_014, HL_1Y0Q_008 | HL_1FJG_030 | HL_3J7A_012, HL_1VWW_063, HL_1VX2_038 |
| HL_36151.1 Compare | HL_1FJG_030 | HL_4BPP_014, HL_1Y0Q_008 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.41 | Max 0.79
Coloring options: