Motif HL_46981.1 Version HL_46981.1 of this group appears in releases 0.5 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2D6F_005 | 2D6F | 0.0000 | 2 | tRNA anticodon loop | F | tRNA | G | 931 | C | 932 | U | 933 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | cWW |
| 2 | HL_4A1B_047 | 4A1B | 0.5508 | 1 | 1 | 26S RRNA | A | 2214 | C | 2215 | G | 2216 | A | 2218 | A | 2219 | U | 2220 | U | 2221 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUUUGGAC | 1 |
| ACGCAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUUGGA | 1 |
| CGCAAU | 1 |
Release history
| Release | 0.5 | 0.6 | 0.7 | 0.8 |
|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_46981.1 | Only in the parent motif |
|---|---|---|---|
| HL_85369.1 Compare | HL_4A1B_047 | HL_2D6F_005 | HL_3U5H_038 |
| HL_66090.1 Compare | HL_2D6F_005 | HL_4A1B_047 |
Children motifs
| Child motif | Common motif instances | Only in HL_46981.1 | Only in the child motif |
|---|---|---|---|
| HL_77235.1 Compare | HL_4A1B_047 | HL_2D6F_005 | HL_1S72_049, HL_1QRS_002, HL_1S72_032 |
| HL_57923.1 Compare | HL_2D6F_005 | HL_4A1B_047 |
- Annotations
-
- tRNA anticodon loop (1)
- (1)
- Basepair signature
- cWW-cWW-R-R
- Heat map statistics
- Min 0.55 | Avg 0.28 | Max 0.55
Coloring options: