Motif HL_48116.2 Version HL_48116.2 of this group appears in releases 1.1 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_009 | 2QBG | 0.8137 | 0 | B | 23S rRNA | C | 225 | A | 226 | A | 227 | C | 228 | C | 229 | G | 230 | cWW | tSH |
| 2 | HL_1Y0Q_006 | 1Y0Q | 0.7983 | 1 | A | Group I catalytic intron | C | 171 | U | 172 | C | 174 | U | 175 | A | 176 | G | 177 | ncWW | |
| 3 | HL_4IOA_016 | 4IOA | 0.0000 | 3 | X | LSU rRNA | C | 552 | C | 553 | U | 557 | G | 558 | C | 559 | G | 560 | cWW | ncWB |
| 4 | HL_3DIR_004 | 3DIR | 0.6976 | 0 | A | RNA (174-MER) | G | 149 | G | 150 | U | 151 | C | 152 | U | 153 | C | 154 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAACCG | 1 |
| CUUCUAG | 1 |
| CCUUAUGCG | 1 |
| GGUCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACC | 1 |
| UUCUA | 1 |
| CUUAUGC | 1 |
| GUCU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_48116.2 | Only in the parent motif |
|---|---|---|---|
| HL_48116.1 Compare | HL_1Y0Q_006, HL_3DIR_004, HL_2QBG_009 | HL_4IOA_016 | HL_2ZJR_016 |
Children motifs
| Child motif | Common motif instances | Only in HL_48116.2 | Only in the child motif |
|---|---|---|---|
| HL_48116.3 Compare | HL_1Y0Q_006, HL_4IOA_016, HL_3DIR_004 | HL_2QBG_009 | HL_1VW3_005 |
| HL_79956.1 Compare | HL_2QBG_009 | HL_1Y0Q_006, HL_4IOA_016, HL_3DIR_004 | HL_2AW7_012, HL_1VW3_056 |
- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.70 | Avg 0.61 | Max 0.95
Coloring options: