Motif HL_50622.6 Version HL_50622.6 of this group appears in releases 3.19 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11	1-11	2-9	2-10	3-9	3-10	4-8
1	HL_6CZR_101	6CZR	0.9825	1		1a	SSU rRNA	G	1338	A	1339	U	1340	C	1341	A	1342	G	1343	C	1344	C	1345	A	1346	G	1348	C	1349	cWW	ntWW	ncWW	ntWW
2	HL_4V7M_039	4V7M	0.7201	0		AY	tRNA	G	29	A	30	U	31	U	32	G	33	U	34	G	35	A	36	U	37	U	38	C	39	ncWW			ncWW	ncWH
3	HL_6GSK_218	6GSK	0.4071	0		3L	tRNA	C	30	C	31	U	32	U	33	G	34	G	35	U	36	A	37	A	38	G	39	G	40	cWW		ncSW	tSH		ntSH
4	HL_4WSM_225	4WSM	0.0000	0		3L	tRNA	C	31	C	32	U	33	U	34	G	35	A	36	G	37	G	38	U	39	G	40	G	41	cWW		ncSW
5	HL_4UYK_001	4UYK	0.5183	0		R	SRP RNA	G	21	G	22	U	23	U	24	C	25	G	26	G	27	C	28	G	29	U	30	C	31	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUCAGCCAUGC	1
GAUUGUGAUUC	1
CCUUGGUAAGG	1
CCUUGAGGUGG	1
GGUUCGGCGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUCAGCCAUG	1
AUUGUGAUU	1
CUUGGUAAG	1
CUUGAGGUG	1
GUUCGGCGU	1

Release history

Release	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations
Basepair signature: cWW-R-R-R-R-R-R-R-R
Heat map statistics: Min 0.41 | Avg 0.60 | Max 0.98

Help

Coloring options: Nucleotide numbers

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