Motif HL_50622.6 Version HL_50622.6 of this group appears in releases 3.19 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10		11	1-11	2-10	3-9
1	HL_6CZR_101	6CZR	0.9825	1	1a	SSU rRNA	G	1338	A	1339	U	1340	C	1341	A	1342	G	1343	C	1344	C	1345	A	1346	G	1348	C	1349	cWW		tWW
2	HL_4V7M_039	4V7M	0.7201	0	AY	tRNA	G	29	A	30	U	31	U	32	G	33	U	34	G	35	A	36	U	37	U	38	C	39	ncWW	ncWH	ncwW
3	HL_6GSK_218	6GSK	0.4071	0	3L	tRNA	C	30	C	31	U	32	U	33	G	34	G	35	U	36	A	37	A	38	G	39	G	40	cWW	ncSW	ntSH
4	HL_4WSM_225	4WSM	0.0000	0	3L	tRNA	C	31	C	32	U	33	U	34	G	35	A	36	G	37	G	38	U	39	G	40	G	41	cWW	cSW
5	HL_4UYK_001	4UYK	0.5183	0	R	SRP RNA	G	21	G	22	U	23	U	24	C	25	G	26	G	27	C	28	G	29	U	30	C	31	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUCAGCCAUGC	1
GAUUGUGAUUC	1
CCUUGGUAAGG	1
CCUUGAGGUGG	1
GGUUCGGCGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUCAGCCAUG	1
AUUGUGAUU	1
CUUGGUAAG	1
CUUGAGGUG	1
GUUCGGCGU	1

Release history

Release	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-R-R-R-R-R-R-R-R
Heat map statistics: Min 0.41 | Avg 0.60 | Max 0.98

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Coloring options: Nucleotide numbers

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