Motif HL_53454.1 Version HL_53454.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_192 | 5J7L | 0.1278 | 1 | DA | LSU rRNA | U | 2404 | G | 2405 | A | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
| 2 | HL_9DFE_057 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | C | 2404 | G | 2405 | G | 2407 | U | 2408 | G | 2409 | G | 2410 | A | 2411 | A | 2412 | G | 2413 | cWW | tSH |
| 3 | HL_4WF9_055 | 4WF9 | 0.1415 | 1 | X | LSU rRNA | C | 2431 | G | 2432 | A | 2434 | U | 2435 | G | 2436 | G | 2437 | A | 2438 | A | 2439 | G | 2440 | cWW | tSH |
| 4 | HL_7A0S_058 | 7A0S | 0.1739 | 1 | X | LSU rRNA | C | 2383 | G | 2384 | G | 2386 | U | 2387 | G | 2388 | G | 2389 | A | 2390 | A | 2391 | G | 2392 | cWW | tSH |
| 5 | HL_3PDR_002 | 3PDR | 0.9315 | 0 | X | M-box riboswitch (ykoK leader) | C | 99 | G | 100 | A | 101 | C | 102 | A | 103 | U | 104 | A | 105 | A | 106 | G | 107 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGUGGAAG | 2 |
| UGAAUGGAAG | 1 |
| CGCAUGGAAG | 1 |
| CGACAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGUGGAA | 2 |
| GAAUGGAA | 1 |
| GCAUGGAA | 1 |
| GACAUAA | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Heat map statistics
- Min 0.13 | Avg 0.38 | Max 0.96
Coloring options: