Motif HL_53504.3 Version HL_53504.3 of this group appears in releases 3.90 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 4-6 | 4-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2A64_005 | 2A64 | 0.0000 | 0 | A | ribonuclease P RNA | G | 288 | G | 289 | A | 290 | A | 291 | A | 292 | U | 293 | G | 294 | A | 295 | A | 296 | C | 297 | cWW | tSH | tHW | ||
| 2 | HL_1NBS_004 | 1NBS | 0.8286 | 2 | B | RNase P class B | C | 96 | G | 97 | A | 98 | G | 100 | C | 102 | A | 103 | U | 104 | A | 105 | A | 106 | G | 107 | cWW | ntSH | ntHW | ntSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAUGAAC | 1 |
| CGAAGUCAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAUGAA | 1 |
| GAAGUCAUAA | 1 |
Release history
| Release | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-F-F-F-F-F-F
- Heat map statistics
- Min 0.83 | Avg 0.41 | Max 0.83
Coloring options: