#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_4UYK_0034UYK0.45521RSRP RNAU98G99U100A101G103cWWntSW
2 HL_9DFE_0069DFE0.258611A LSU rRNAA225G226A227A228U230cWW
3 HL_7A0S_0077A0S0.00001X LSU rRNAA202G203A204A205U207cWWcSW
4 HL_4WF9_0074WF90.27291X LSU rRNAA228A229A230A231U233cWWcSW
5 HL_8P9A_1148P9A0.29701AR LSU rRNAC69A70A71C72G74cWWcSW
6 HL_8P9A_1888P9A0.40052AT 5.8S rRNAC108A109C110U112G114cWW
7 HL_8P9A_1938P9A0.42191sR SSU rRNAC190C191U192U193G195cWW
8 HL_1P6V_0011P6V0.58791UNCG variationB45-MERC26U27C29G30G31cWW
9 HL_7A0S_0237A0S0.37632X LSU rRNAU792G793A795A796G798cWWcSW
10 HL_2NUE_0012NUE0.34591GNRA relatedC46-MERC21G22A24A25G26cWWncSW
11 HL_6VMY_0046VMY0.48862ACobalamin riboswitchC287C288A290G291G293cWWncWH
12 HL_8S95_0038S950.56942CEnterovirus 5' cloverleaf cis-acting replication elementC67C68C70G71G73cWWncWH
13 HL_8P9A_1948P9A0.49971sR SSU rRNAC230U231C233G234G235ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUCGG2
UGUAAG1
AGAAAU1
AGAAUU1
AAAAUU1
CAACCG1
CACAUUG1
CCUUUG1
UGAAAAG1
CGCAAG1
CCAAGCG1
CCACGUG1
Non-Watson-Crick part of the motif
SequenceCounts
UUCG2
GUAA1
GAAA1
GAAU1
AAAU1
AACC1
ACAUU1
CUUU1
GAAAA1
GCAA1
CAAGC1
CACGU1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusNew id, 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (11)
  • UNCG variation (1)
  • GNRA related (1)
  • Basepair signature
    cWW-F-F-F
    Heat map statistics
    Min 0.25 | Avg 0.47 | Max 0.86
    Help

    Coloring options:

    HL_4UYK_003:HL_4UYK_003 = 0HL_4UYK_003:HL_9DFE_006 = 0.341HL_4UYK_003:HL_7A0S_007 = 0.4552HL_4UYK_003:HL_4WF9_007 = 0.4446HL_4UYK_003:HL_8P9A_114 = 0.4291HL_4UYK_003:HL_8P9A_188 = 0.504HL_4UYK_003:HL_8P9A_193 = 0.569HL_4UYK_003:HL_1P6V_001 = 0.8567HL_4UYK_003:HL_7A0S_023 = 0.824HL_4UYK_003:HL_2NUE_001 = 0.5524HL_4UYK_003:HL_6VMY_004 = 0.6371HL_4UYK_003:HL_8S95_003 = 0.5888HL_4UYK_003:HL_8P9A_194 = 0.5348HL_9DFE_006:HL_4UYK_003 = 0.341HL_9DFE_006:HL_9DFE_006 = 0HL_9DFE_006:HL_7A0S_007 = 0.2586HL_9DFE_006:HL_4WF9_007 = 0.3487HL_9DFE_006:HL_8P9A_114 = 0.3019HL_9DFE_006:HL_8P9A_188 = 0.4849HL_9DFE_006:HL_8P9A_193 = 0.4757HL_9DFE_006:HL_1P6V_001 = 0.6799HL_9DFE_006:HL_7A0S_023 = 0.5458HL_9DFE_006:HL_2NUE_001 = 0.3883HL_9DFE_006:HL_6VMY_004 = 0.5726HL_9DFE_006:HL_8S95_003 = 0.5867HL_9DFE_006:HL_8P9A_194 = 0.6926HL_7A0S_007:HL_4UYK_003 = 0.4552HL_7A0S_007:HL_9DFE_006 = 0.2586HL_7A0S_007:HL_7A0S_007 = 0HL_7A0S_007:HL_4WF9_007 = 0.2729HL_7A0S_007:HL_8P9A_114 = 0.297HL_7A0S_007:HL_8P9A_188 = 0.4005HL_7A0S_007:HL_8P9A_193 = 0.4219HL_7A0S_007:HL_1P6V_001 = 0.5879HL_7A0S_007:HL_7A0S_023 = 0.3763HL_7A0S_007:HL_2NUE_001 = 0.3459HL_7A0S_007:HL_6VMY_004 = 0.4886HL_7A0S_007:HL_8S95_003 = 0.5694HL_7A0S_007:HL_8P9A_194 = 0.4997HL_4WF9_007:HL_4UYK_003 = 0.4446HL_4WF9_007:HL_9DFE_006 = 0.3487HL_4WF9_007:HL_7A0S_007 = 0.2729HL_4WF9_007:HL_4WF9_007 = 0HL_4WF9_007:HL_8P9A_114 = 0.252HL_4WF9_007:HL_8P9A_188 = 0.3551HL_4WF9_007:HL_8P9A_193 = 0.4155HL_4WF9_007:HL_1P6V_001 = 0.6324HL_4WF9_007:HL_7A0S_023 = 0.4657HL_4WF9_007:HL_2NUE_001 = 0.4901HL_4WF9_007:HL_6VMY_004 = 0.5475HL_4WF9_007:HL_8S95_003 = 0.6251HL_4WF9_007:HL_8P9A_194 = 0.7813HL_8P9A_114:HL_4UYK_003 = 0.4291HL_8P9A_114:HL_9DFE_006 = 0.3019HL_8P9A_114:HL_7A0S_007 = 0.297HL_8P9A_114:HL_4WF9_007 = 0.252HL_8P9A_114:HL_8P9A_114 = 0HL_8P9A_114:HL_8P9A_188 = 0.3675HL_8P9A_114:HL_8P9A_193 = 0.3395HL_8P9A_114:HL_1P6V_001 = 0.6625HL_8P9A_114:HL_7A0S_023 = 0.5414HL_8P9A_114:HL_2NUE_001 = 0.4597HL_8P9A_114:HL_6VMY_004 = 0.5397HL_8P9A_114:HL_8S95_003 = 0.7874HL_8P9A_114:HL_8P9A_194 = 0.6971HL_8P9A_188:HL_4UYK_003 = 0.504HL_8P9A_188:HL_9DFE_006 = 0.4849HL_8P9A_188:HL_7A0S_007 = 0.4005HL_8P9A_188:HL_4WF9_007 = 0.3551HL_8P9A_188:HL_8P9A_114 = 0.3675HL_8P9A_188:HL_8P9A_188 = 0HL_8P9A_188:HL_8P9A_193 = 0.4305HL_8P9A_188:HL_1P6V_001 = 0.5626HL_8P9A_188:HL_7A0S_023 = 0.5371HL_8P9A_188:HL_2NUE_001 = 0.4802HL_8P9A_188:HL_6VMY_004 = 0.4695HL_8P9A_188:HL_8S95_003 = 0.7817HL_8P9A_188:HL_8P9A_194 = 0.7677HL_8P9A_193:HL_4UYK_003 = 0.569HL_8P9A_193:HL_9DFE_006 = 0.4757HL_8P9A_193:HL_7A0S_007 = 0.4219HL_8P9A_193:HL_4WF9_007 = 0.4155HL_8P9A_193:HL_8P9A_114 = 0.3395HL_8P9A_193:HL_8P9A_188 = 0.4305HL_8P9A_193:HL_8P9A_193 = 0HL_8P9A_193:HL_1P6V_001 = 0.5028HL_8P9A_193:HL_7A0S_023 = 0.5216HL_8P9A_193:HL_2NUE_001 = 0.4666HL_8P9A_193:HL_6VMY_004 = 0.462HL_8P9A_193:HL_8S95_003 = 0.4604HL_8P9A_193:HL_8P9A_194 = 0.7413HL_1P6V_001:HL_4UYK_003 = 0.8567HL_1P6V_001:HL_9DFE_006 = 0.6799HL_1P6V_001:HL_7A0S_007 = 0.5879HL_1P6V_001:HL_4WF9_007 = 0.6324HL_1P6V_001:HL_8P9A_114 = 0.6625HL_1P6V_001:HL_8P9A_188 = 0.5626HL_1P6V_001:HL_8P9A_193 = 0.5028HL_1P6V_001:HL_1P6V_001 = 0HL_1P6V_001:HL_7A0S_023 = 0.4494HL_1P6V_001:HL_2NUE_001 = 0.425HL_1P6V_001:HL_6VMY_004 = 0.48HL_1P6V_001:HL_8S95_003 = 0.5094HL_1P6V_001:HL_8P9A_194 = 0.6672HL_7A0S_023:HL_4UYK_003 = 0.824HL_7A0S_023:HL_9DFE_006 = 0.5458HL_7A0S_023:HL_7A0S_007 = 0.3763HL_7A0S_023:HL_4WF9_007 = 0.4657HL_7A0S_023:HL_8P9A_114 = 0.5414HL_7A0S_023:HL_8P9A_188 = 0.5371HL_7A0S_023:HL_8P9A_193 = 0.5216HL_7A0S_023:HL_1P6V_001 = 0.4494HL_7A0S_023:HL_7A0S_023 = 0HL_7A0S_023:HL_2NUE_001 = 0.3759HL_7A0S_023:HL_6VMY_004 = 0.4355HL_7A0S_023:HL_8S95_003 = 0.5259HL_7A0S_023:HL_8P9A_194 = 0.6074HL_2NUE_001:HL_4UYK_003 = 0.5524HL_2NUE_001:HL_9DFE_006 = 0.3883HL_2NUE_001:HL_7A0S_007 = 0.3459HL_2NUE_001:HL_4WF9_007 = 0.4901HL_2NUE_001:HL_8P9A_114 = 0.4597HL_2NUE_001:HL_8P9A_188 = 0.4802HL_2NUE_001:HL_8P9A_193 = 0.4666HL_2NUE_001:HL_1P6V_001 = 0.425HL_2NUE_001:HL_7A0S_023 = 0.3759HL_2NUE_001:HL_2NUE_001 = 0HL_2NUE_001:HL_6VMY_004 = 0.4073HL_2NUE_001:HL_8S95_003 = 0.4797HL_2NUE_001:HL_8P9A_194 = 0.4853HL_6VMY_004:HL_4UYK_003 = 0.6371HL_6VMY_004:HL_9DFE_006 = 0.5726HL_6VMY_004:HL_7A0S_007 = 0.4886HL_6VMY_004:HL_4WF9_007 = 0.5475HL_6VMY_004:HL_8P9A_114 = 0.5397HL_6VMY_004:HL_8P9A_188 = 0.4695HL_6VMY_004:HL_8P9A_193 = 0.462HL_6VMY_004:HL_1P6V_001 = 0.48HL_6VMY_004:HL_7A0S_023 = 0.4355HL_6VMY_004:HL_2NUE_001 = 0.4073HL_6VMY_004:HL_6VMY_004 = 0HL_6VMY_004:HL_8S95_003 = 0.3292HL_6VMY_004:HL_8P9A_194 = 0.4374HL_8S95_003:HL_4UYK_003 = 0.5888HL_8S95_003:HL_9DFE_006 = 0.5867HL_8S95_003:HL_7A0S_007 = 0.5694HL_8S95_003:HL_4WF9_007 = 0.6251HL_8S95_003:HL_8P9A_114 = 0.7874HL_8S95_003:HL_8P9A_188 = 0.7817HL_8S95_003:HL_8P9A_193 = 0.4604HL_8S95_003:HL_1P6V_001 = 0.5094HL_8S95_003:HL_7A0S_023 = 0.5259HL_8S95_003:HL_2NUE_001 = 0.4797HL_8S95_003:HL_6VMY_004 = 0.3292HL_8S95_003:HL_8S95_003 = 0HL_8S95_003:HL_8P9A_194 = 0.4345HL_8P9A_194:HL_4UYK_003 = 0.5348HL_8P9A_194:HL_9DFE_006 = 0.6926HL_8P9A_194:HL_7A0S_007 = 0.4997HL_8P9A_194:HL_4WF9_007 = 0.7813HL_8P9A_194:HL_8P9A_114 = 0.6971HL_8P9A_194:HL_8P9A_188 = 0.7677HL_8P9A_194:HL_8P9A_193 = 0.7413HL_8P9A_194:HL_1P6V_001 = 0.6672HL_8P9A_194:HL_7A0S_023 = 0.6074HL_8P9A_194:HL_2NUE_001 = 0.4853HL_8P9A_194:HL_6VMY_004 = 0.4374HL_8P9A_194:HL_8S95_003 = 0.4345HL_8P9A_194:HL_8P9A_194 = 0HL_4UYK_003HL_9DFE_006HL_7A0S_007HL_4WF9_007HL_8P9A_114HL_8P9A_188HL_8P9A_193HL_1P6V_001HL_7A0S_023HL_2NUE_001HL_6VMY_004HL_8S95_003HL_8P9A_194Discrepancy0.000.200.400.600.80
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