Motif HL_55359.1 Version HL_55359.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_045 | 5TBW | 0.6565 | 2 | 1 | LSU rRNA | G | 2110 | A | 2113 | C | 2114 | cWW |
| 2 | HL_8C3A_045 | 8C3A | 0.6223 | 2 | 1 | LSU rRNA | G | 2088 | A | 2091 | C | 2092 | cWW |
| 3 | HL_6FQ3_001 | 6FQ3 | 0.5757 | 2 | B | RNA (13-mer) | U | 5 | A | 8 | A | 9 | cWW |
| 4 | HL_6FQL_001 | 6FQL | 0.5724 | 2 | B | RNA (13-mer) | U | 5 | A | 8 | A | 9 | cWW |
| 5 | HL_5J7L_176 | 5J7L | 0.3446 | 1 | DA | LSU rRNA | C | 1728 | C | 1730 | G | 1731 | ncWW |
| 6 | HL_5TBW_068 | 5TBW | 0.3065 | 1 | 1 | LSU rRNA | C | 3194 | U | 3196 | G | 3197 | cWW |
| 7 | HL_8VM9_005 | 8VM9 | 0.0000 | 2 | R | RNA (85-MER) | C | 34 | U | 36 | G | 38 | cWW |
| 8 | HL_4Z0C_002 | 4Z0C | 0.3406 | 5 | C | DNA (5'-R(P*AP*CP*GP*GP*AP*AP*AP*GP*AP*CP*CP*CP*C)-3') | G | 4 | A | 9 | C | 11 | cWW |
| 9 | HL_2B3J_003 | 2B3J | 0.4141 | 3 | G | anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42) | C | 32 | G | 36 | G | 37 | cWW |
| 10 | HL_5B2P_004 | 5B2P | 0.5662 | 2 | B | Guide RNA | U | 82 | G | 85 | A | 86 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAC | 2 |
| UCCAA | 1 |
| UUUAA | 1 |
| CUCG | 1 |
| CUUG | 1 |
| CAUUG | 1 |
| GAAAGACC | 1 |
| CUCGG | 1 |
| UUUGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA | 2 |
| CCA | 1 |
| UUA | 1 |
| UC | 1 |
| UU | 1 |
| AUU | 1 |
| AAAGAC | 1 |
| U(P5P)CG | 1 |
| UUG | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: