Motif HL_56131.1 Version HL_56131.1 of this group appears in releases 3.89 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3WQY_004 | 3WQY | 0.6584 | 1 | C | tRNA | U | 1633 | U | 1634 | C | 1636 | G | 1637 | ncWW |
| 2 | HL_2ZUE_002 | 2ZUE | 0.2577 | 5 | B | tRNA-Arg | C | 931 | C | 932 | A | 937 | G | 939 | cWW |
| 3 | HL_1F7U_002 | 1F7U | 0.0000 | 5 | B | TRNA(ARG) | G | 931 | C | 932 | A | 937 | C | 939 | cWW |
| 4 | HL_4ILL_001 | 4ILL | 0.3048 | 3 | R | RNA (24-mer) | U | 8 | C | 10 | A | 12 | A | 14 | cWW |
| 5 | HL_4ILM_002 | 4ILM | 0.2809 | 3 | C | RNA (16-mer) | U | 8 | C | 10 | A | 12 | A | 14 | cWW |
| 6 | HL_2PJP_001 | 2PJP | 0.4255 | 0 | B | SECIS RNA | G | 22 | G | 23 | U | 24 | C | 25 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACUAUA | 2 |
| UUGCG | 1 |
| CCUCCUAAG | 1 |
| GCU(I)CGAAC | 1 |
| GGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUAU | 2 |
| UGC | 1 |
| CUCCUAA | 1 |
| CU(I)CGAA | 1 |
| GU | 1 |
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