Motif HL_84172.1 Version HL_84172.1 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4A1B_071 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | G | 3306 | A | 3307 | A | 3308 | U | 3309 | U | 3310 | C | 3312 | C | 3313 | cWW | ncWW |
| 2 | HL_1U0B_001 | 1U0B | 0.8318 | 4 | A | tRNA | A | 12 | A | 13 | A | 14 | G | 15 | C | 16 | A | 22 | U | 23 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAUUUCC | 1 |
| AAAGCGGUUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUUUC | 1 |
| AAGCGGUUA | 1 |
Release history
| Release | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|
| Date | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_84172.1 | Only in the parent motif |
|---|---|---|---|
| HL_90542.1 Compare | HL_4A1B_071 | HL_1U0B_001 | HL_4BPP_023 |
| HL_58083.2 Compare | HL_1U0B_001 | HL_4A1B_071 | HL_2DU3_001, HL_2DU6_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.83 | Avg 0.42 | Max 0.83
Coloring options: