Motif HL_66174.2 Version HL_66174.2 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-5 | 4-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2CZJ_001 | 2CZJ | 0.9157 | 1 | B | tmRNA (63-MER) | G | 23 | G | 24 | G | 25 | U | 26 | C | 28 | G | 29 | C | 30 | C | 31 | U | 32 | cWW | ncWW | ncWW | ncWW | |
| 2 | HL_3RKF_003 | 3RKF | 0.1784 | 0 | A | Guanine riboswitch | A | 59 | C | 60 | U | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 3 | HL_4LX6_003 | 4LX6 | 0.1055 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | ncSH | ||
| 4 | HL_3FO4_003 | 3FO4 | 0.0000 | 0 | A | Guanine riboswitch C74U mutant | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 5 | HL_3LA5_003 | 3LA5 | 0.1348 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | ||
| 6 | HL_1Y26_003 | 1Y26 | 0.3905 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCUUAAAC | 3 |
| GGGUUCGCCU | 1 |
| ACUGUAAAU | 1 |
| ACCGUAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUAAA | 3 |
| GGUUCGCC | 1 |
| CUGUAAA | 1 |
| CCGUAAA | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_66174.2 | Only in the parent motif |
|---|---|---|---|
| HL_66174.1 Compare | HL_1Y26_003, HL_3RKF_003, HL_3FO4_003, HL_3LA5_003, HL_2CZJ_001 | HL_4LX6_003 |
Children motifs
| Child motif | Common motif instances | Only in HL_66174.2 | Only in the child motif |
|---|---|---|---|
| HL_66174.3 Compare | HL_4LX6_003, HL_1Y26_003, HL_3RKF_003, HL_3FO4_003, HL_3LA5_003 | HL_2CZJ_001 | HL_4QCN_025 |
| HL_59516.1 Compare | HL_2CZJ_001 | HL_4LX6_003, HL_1Y26_003, HL_3RKF_003, HL_3FO4_003, HL_3LA5_003 | HL_3RG5_002, HL_3P49_004 |
- Annotations
-
- (6)
- Basepair signature
- cWW-R-cSW-R-cSH
- Heat map statistics
- Min 0.11 | Avg 0.40 | Max 0.97
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