Motif HL_60200.1 Version HL_60200.1 of this group appears in releases 1.1 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_035 | 3U5H | 0.0000 | 2 | 5 | 25S rRNA | G | 1599 | U | 1600 | U | 1601 | A | 1602 | A | 1603 | G | 1604 | A | 1605 | C | 1608 | cWW | tWH |
| 2 | HL_4IOA_034 | 4IOA | 0.5993 | 2 | X | LSU rRNA | G | 1402 | U | 1403 | C | 1404 | A | 1405 | A | 1406 | G | 1407 | A | 1408 | C | 1411 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAGAUUC | 1 |
| GUCAAGAUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAGAUU | 1 |
| UCAAGAUU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_60200.1 | Only in the parent motif |
|---|---|---|---|
| HL_76105.1 Compare | HL_3U5H_035 | HL_4IOA_034 | HL_2ZJR_035 |
Children motifs
| Child motif | Common motif instances | Only in HL_60200.1 | Only in the child motif |
|---|---|---|---|
| HL_60200.2 Compare | HL_4IOA_034, HL_3U5H_035 | HL_4CUV_035 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tWH-R-R-R-R
- Heat map statistics
- Min 0.60 | Avg 0.30 | Max 0.60
Coloring options: