Motif HL_76105.1 Version HL_76105.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2ZJR_035 | 2ZJR | 0.0000 | 1 | X | LSU rRNA | G | 1402 | U | 1403 | C | 1404 | A | 1405 | A | 1406 | G | 1407 | A | 1408 | U | 1410 | C | 1411 | cWW | tWH |
| 2 | HL_3U5H_035 | 3U5H | 0.5341 | 1 | 5 | LSU rRNA | G | 1599 | U | 1600 | U | 1601 | A | 1602 | A | 1603 | G | 1604 | A | 1605 | U | 1607 | C | 1608 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAAGAUUC | 1 |
| GUUAAGAUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAAGAUU | 1 |
| UUAAGAUU | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_76105.1 | Only in the parent motif |
|---|---|---|---|
| HL_77557.1 Compare | HL_2ZJR_035 | HL_3U5H_035 | HL_3P49_002 |
Children motifs
| Child motif | Common motif instances | Only in HL_76105.1 | Only in the child motif |
|---|---|---|---|
| HL_60200.1 Compare | HL_3U5H_035 | HL_2ZJR_035 | HL_4IOA_034 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-tWH-R-R-R-R
- Heat map statistics
- Min 0.53 | Avg 0.27 | Max 0.53
Coloring options: