Motif HL_63054.1 Version HL_63054.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 7-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5WT1_001 | 5WT1 | 0.4481 | 3 | tRNA D-loop | C | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | ||
| 2 | HL_7VNV_007 | 7VNV | 0.4431 | 4 | tRNA D-loop | A | tRNA | PSU | 13 | A | 14 | 7SN | 15 | C | 16 | OMC | 17 | U | 17|||a | A | 21 | G | 22 | cWW | ||
| 3 | HL_8B0X_030 | 8B0X | 0.3108 | 3 | tRNA D-loop (H) | Z | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | ncWS | |
| 4 | HL_6CFJ_106 | 6CFJ | 0.0000 | 3 | tRNA D-loop | 1x | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | cWS | |
| 5 | HL_4TUE_141 | 4TUE | 0.2381 | 3 | tRNA D-loop (H) | XV | tRNA | C | 12 | A | 13 | G | 14 | C | 15 | C | 16 | U | 17 | A | 21 | G | 22 | cWW | cWS | |
| 6 | HL_4V9Q_213 | 4V9Q | 0.2522 | 3 | tRNA D-loop | DV | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | ncSH | |
| 7 | HL_2ZUE_001 | 2ZUE | 0.3182 | 4 | tRNA D-loop | B | tRNA-Arg | U | 913 | A | 914 | G | 915 | C | 916 | C | 917 | A | 917|||A | A | 921 | G | 922 | cWW | cWS | |
| 8 | HL_5J8B_108 | 5J8B | 0.5110 | 3 | tRNA D-loop (H) | x | tRNA | C | 13 | A | 14 | G | 15 | C | 16 | C | 17 | U | 17|||A | A | 21 | G | 22 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCUGGUAG | 5 |
| CAGCCUGGGAG | 1 |
| (PSU)A(7SN)C(OMC)UGGUUAG | 1 |
| UAGCCAGGACAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCCUGGUA | 5 |
| AGCCUGGGA | 1 |
| A(7SN)C(OMC)UGGUUA | 1 |
| AGCCAGGACA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA D-loop (5)
- tRNA D-loop (H) (3)
- Basepair signature
- cWW-cWS-F-F-F-F
- Heat map statistics
- Min 0.24 | Avg 0.39 | Max 0.67
Coloring options: