Motif HL_64107.1 Version HL_64107.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8VTW_061 | 8VTW | 0.0000 | 4 | 1A | LSU rRNA | C | 2551 | OMU | 2552 | G | 2557 | cWW | |
| 2 | HL_5J7L_195 | 5J7L | 0.0833 | 4 | DA | LSU rRNA | C | 2551 | OMU | 2552 | G | 2557 | cWW | |
| 3 | HL_8C3A_039 | 8C3A | 0.1462 | 3 | 1 | LSU rRNA | A | 1756 | A | 1757 | U | 1761 | cWW | |
| 4 | HL_4V9F_075 | 4V9F | 0.8574 | 3 | 0 | LSU rRNA | C | 1558 | A | 1559 | G | 1563 | ncWW | |
| 5 | HL_8C3A_206 | 8C3A | 0.7721 | 3 | GNRA variation | CM | SSU rRNA | C | 567 | A | 568 | G | 572 | cWW |
| 6 | HL_4V88_200 | 4V88 | 0.7783 | 3 | GNRA variation | A6 | SSU rRNA | C | 569 | A | 570 | G | 574 | cWW |
| 7 | HL_5J7L_205 | 5J7L | 0.7012 | 3 | GNRA variation | AA | SSU rRNA | C | 522 | A | 523 | G7M | 527 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCCG | 2 |
| C(OMU)GUUCG | 1 |
| CGUUCG | 1 |
| AAUUUU | 1 |
| CAUUCG | 1 |
| CAGCC(G7M) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCC | 3 |
| (OMU)GUUC | 2 |
| AUUU | 1 |
| AUUC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- GNRA variation (3)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.08 | Avg 0.51 | Max 0.98
Coloring options: