Motif HL_64430.1 Version HL_64430.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_041 | 5TBW | 0.0000 | 3 | 1 | LSU rRNA | C | 1844 | G | 1845 | A | 1847 | C | 1849 | G | 1851 | cWW |
| 2 | HL_4V9F_042 | 4V9F | 0.1974 | 3 | 0 | LSU rRNA | C | 1687 | G | 1688 | C | 1690 | C | 1692 | G | 1694 | cWW |
| 3 | HL_7A0S_040 | 7A0S | 0.2697 | 3 | X | LSU rRNA | C | 1628 | G | 1629 | C | 1631 | C | 1633 | G | 1635 | cWW |
| 4 | HL_7RQB_040 | 7RQB | 0.2745 | 3 | 1A | LSU rRNA | C | 1612 | G | 1613 | C | 1615 | C | 1617 | G | 1619 | cWW |
| 5 | HL_4WF9_038 | 4WF9 | 0.2817 | 3 | X | LSU rRNA | C | 1656 | G | 1657 | C | 1659 | C | 1661 | G | 1663 | cWW |
| 6 | HL_4WF9_028 | 4WF9 | 0.4980 | 3 | X | LSU rRNA | G | 1022 | A | 1023 | A | 1025 | C | 1026 | C | 1029 | cWW |
| 7 | HL_5J7L_160 | 5J7L | 0.4964 | 3 | DA | LSU rRNA | G | 978 | A | 979 | A | 981 | C | 982 | C | 985 | cWW |
| 8 | HL_7A0S_027 | 7A0S | 0.4956 | 3 | X | LSU rRNA | G | 989 | A | 990 | A | 992 | C | 993 | C | 996 | cWW |
| 9 | HL_7RQB_028 | 7RQB | 0.5779 | 3 | 1A | LSU rRNA | G | 978 | G | 979 | A | 981 | C | 982 | C | 985 | cWW |
| 10 | HL_4V9F_029 | 4V9F | 0.5953 | 3 | 0 | LSU rRNA | G | 1076 | G | 1077 | A | 1079 | C | 1080 | C | 1083 | cWW |
| 11 | HL_5TBW_026 | 5TBW | 0.7583 | 3 | 1 | LSU rRNA | G | 1148 | G | 1149 | U | 1151 | G | 1152 | C | 1155 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACACAG | 4 |
| GAAACAAC | 2 |
| GGAACAAC | 2 |
| CGCAGCAG | 1 |
| GAAACAGC | 1 |
| GGAUGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACACA | 4 |
| AAACAA | 2 |
| GAACAA | 2 |
| GCAGCA | 1 |
| AAACAG | 1 |
| GAUGAA | 1 |
- Annotations
-
- (11)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.35 | Max 0.78
Coloring options: