HL_65572.1

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	1-3
1	HL_1ZBH_001	1ZBH	0.0000	3	Mini UNCG	F	RNA (20-mer)	U	11	U	14	A	16	cWW
2	HL_2ZUE_002	2ZUE	0.1913	6		B	tRNA-Arg	C	931	A	937	G	939	cWW
3	HL_5T16_002	5T16	0.2536	3	Mini UNCG	H	RNA substrate analog	G	16	U	19	C	21	cWW
4	HL_4QOZ_001	4QOZ	0.2294	3	Mini UNCG	A	histone mRNA stem-loop	U	11	U	14	A	16	cWW
5	HL_4TUW_002	4TUW	0.2980	3	Mini UNCG	C	HISTONE MRNA 3' STEM LOOP	U	13	U	16	A	18	cWW
6	HL_4ILL_001	4ILL	0.4292	4		R	RNA (24-mer)	U	8	A	12	A	14	cWW
7	HL_4ILM_002	4ILM	0.3728	4		C	RNA (16-mer)	U	8	A	12	A	14	cWW
8	HL_4OOG_001	4OOG	0.2564	3	Mini UNCG	D	34-mer RNA	G	14	U	17	C	19	cWW
9	HL_5WTK_001	5WTK	0.4671	8		B	RNA (58-MER)	C	7	A	15	G	17	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUUUCA	3
GAGUCC	2
UACUAUA	2
CCUCCUAAG	1
CAAUAUCGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUUC	3
AGUC	2
ACUAU	2
CUCCUAA	1
AAUAUCGAA	1

Release history

Release	3.77	3.78	3.79
Date	2023-12-06	2024-01-03	2024-01-03
Status	New id, > 2 parents	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Mini UNCG (5)
(4)
Basepair signature: cWW-F
Heat map statistics: Min 0.13 | Avg 0.26 | Max 0.78

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