Motif HL_66174.3 Version HL_66174.3 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1Y26_003 | 1Y26 | 0.3905 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | ||
| 2 | HL_3LA5_003 | 3LA5 | 0.1348 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | |
| 3 | HL_3FO4_003 | 3FO4 | 0.0000 | 0 | A | Guanine riboswitch C74U mutant | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | |
| 4 | HL_4LX6_003 | 4LX6 | 0.1055 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | ncSH | |
| 5 | HL_3RKF_003 | 3RKF | 0.1784 | 0 | A | Guanine riboswitch | A | 59 | C | 60 | U | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | |
| 6 | HL_4QCN_025 | 4QCN | 0.8997 | 1 | A | 23S Ribosomal RNA | G | 930 | C | 931 | C | 932 | C | 933 | A | 934 | C | 936 | A | 937 | G | 938 | C | 939 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCUUAAAC | 3 |
| ACCGUAAAU | 1 |
| ACUGUAAAU | 1 |
| GCCCACCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUAAA | 3 |
| CCGUAAA | 1 |
| CUGUAAA | 1 |
| CCCACCAG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_66174.3 | Only in the parent motif |
|---|---|---|---|
| HL_66174.2 Compare | HL_4LX6_003, HL_1Y26_003, HL_3RKF_003, HL_3FO4_003, HL_3LA5_003 | HL_4QCN_025 | HL_2CZJ_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_66174.3 | Only in the child motif |
|---|---|---|---|
| HL_66174.4 Compare | HL_4QCN_025, HL_3RKF_003, HL_4LX6_003, HL_1Y26_003, HL_3FO4_003, HL_3LA5_003 | HL_4TZX_003 |
- Annotations
-
- (6)
- Basepair signature
- cWW-R-cSW-R-cSH
- Heat map statistics
- Min 0.11 | Avg 0.39 | Max 0.94
Coloring options: