RNA 3D Hub //

Motif HL_66421.1 Version HL_66421.1 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 61-62-53-4
1 HL_6CF2_0016CF20.78262GRNA (35-MER)A13C14U15G18G19U20cWW
2 HL_7RGU_0037RGU0.80792FModified SL3 of RocRU9C10U11G14G15A16cWWncWWtSW
3 HL_5H9F_0015H9F0.62282LcrRNA (61-MER)G50C51G52A55G56C57cWW
4 HL_2DER_0042DER0.54195DtRNAU13A14G15C20A21G22cWWcWStSW
5 HL_5HR7_0045HR70.58725D tRNAU13A14G15C20A21G22cWWcWStSW
6 HL_5HR6_0015HR60.54955C tRNAU12A13G14C19A21G22cWWcWStSW
7 HL_1N78_0011N780.00004CtRNA(Glu)U513A514G515U520A521G522cWWcWSntSH

3D structures

Complete motif including flanking bases
SequenceCounts
UAGAGGCCCAG3
ACUUCGGU1
UCUUCGGA1
GCGCCAGC1
UAGCGGUUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AGAGGCCCA3
CUUCGG2
CGCCAG1
AGCGGUUA1

Release history

Release3.87
Date2024-08-14
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
    • Basepair signature
    cWW-cWS-F-F
    Heat map statistics
    Min 0.07 | Avg 0.53 | Max 0.99
    Help

    Coloring options:

    HL_6CF2_001:HL_6CF2_001 = 0HL_6CF2_001:HL_7RGU_003 = 0.3005HL_6CF2_001:HL_5H9F_001 = 0.4557HL_6CF2_001:HL_2DER_004 = 0.8939HL_6CF2_001:HL_5HR7_004 = 0.9936HL_6CF2_001:HL_5HR6_001 = 0.9574HL_6CF2_001:HL_1N78_001 = 0.7826HL_7RGU_003:HL_6CF2_001 = 0.3005HL_7RGU_003:HL_7RGU_003 = 0HL_7RGU_003:HL_5H9F_001 = 0.4139HL_7RGU_003:HL_2DER_004 = 0.6977HL_7RGU_003:HL_5HR7_004 = 0.8089HL_7RGU_003:HL_5HR6_001 = 0.7792HL_7RGU_003:HL_1N78_001 = 0.8079HL_5H9F_001:HL_6CF2_001 = 0.4557HL_5H9F_001:HL_7RGU_003 = 0.4139HL_5H9F_001:HL_5H9F_001 = 0HL_5H9F_001:HL_2DER_004 = 0.5725HL_5H9F_001:HL_5HR7_004 = 0.8674HL_5H9F_001:HL_5HR6_001 = 0.8584HL_5H9F_001:HL_1N78_001 = 0.6228HL_2DER_004:HL_6CF2_001 = 0.8939HL_2DER_004:HL_7RGU_003 = 0.6977HL_2DER_004:HL_5H9F_001 = 0.5725HL_2DER_004:HL_2DER_004 = 0HL_2DER_004:HL_5HR7_004 = 0.2494HL_2DER_004:HL_5HR6_001 = 0.2261HL_2DER_004:HL_1N78_001 = 0.5419HL_5HR7_004:HL_6CF2_001 = 0.9936HL_5HR7_004:HL_7RGU_003 = 0.8089HL_5HR7_004:HL_5H9F_001 = 0.8674HL_5HR7_004:HL_2DER_004 = 0.2494HL_5HR7_004:HL_5HR7_004 = 0HL_5HR7_004:HL_5HR6_001 = 0.0685HL_5HR7_004:HL_1N78_001 = 0.5872HL_5HR6_001:HL_6CF2_001 = 0.9574HL_5HR6_001:HL_7RGU_003 = 0.7792HL_5HR6_001:HL_5H9F_001 = 0.8584HL_5HR6_001:HL_2DER_004 = 0.2261HL_5HR6_001:HL_5HR7_004 = 0.0685HL_5HR6_001:HL_5HR6_001 = 0HL_5HR6_001:HL_1N78_001 = 0.5495HL_1N78_001:HL_6CF2_001 = 0.7826HL_1N78_001:HL_7RGU_003 = 0.8079HL_1N78_001:HL_5H9F_001 = 0.6228HL_1N78_001:HL_2DER_004 = 0.5419HL_1N78_001:HL_5HR7_004 = 0.5872HL_1N78_001:HL_5HR6_001 = 0.5495HL_1N78_001:HL_1N78_001 = 0HL_6CF2_001HL_7RGU_003HL_5H9F_001HL_2DER_004HL_5HR7_004HL_5HR6_001HL_1N78_001Discrepancy0.000.200.400.600.80
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