Motif HL_66421.1 Version HL_66421.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CF2_001 | 6CF2 | 0.7826 | 2 | G | A | 13 | C | 14 | U | 15 | G | 18 | G | 19 | U | 20 | cWW | ||
| 2 | HL_7RGU_003 | 7RGU | 0.8079 | 2 | F | U | 9 | C | 10 | U | 11 | G | 14 | G | 15 | A | 16 | cWW | ncWW | tSW |
| 3 | HL_5H9F_001 | 5H9F | 0.6228 | 2 | L | G | 50 | C | 51 | G | 52 | A | 55 | G | 56 | C | 57 | cWW | ||
| 4 | HL_2DER_004 | 2DER | 0.5419 | 5 | D | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW |
| 5 | HL_5HR7_004 | 5HR7 | 0.5872 | 5 | D | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW |
| 6 | HL_5HR6_001 | 5HR6 | 0.5495 | 5 | C | U | 12 | A | 13 | G | 14 | C | 19 | A | 21 | G | 22 | cWW | cWS | tSW |
| 7 | HL_1N78_001 | 1N78 | 0.0000 | 4 | C | U | 513 | A | 514 | G | 515 | U | 520 | A | 521 | G | 522 | cWW | cWS | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGAGGCCCAG | 3 |
| ACUUCGGU | 1 |
| UCUUCGGA | 1 |
| GCGCCAGC | 1 |
| UAGCGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAGGCCCA | 3 |
| CUUCGG | 2 |
| CGCCAG | 1 |
| AGCGGUUA | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWS-F-F
- Heat map statistics
- Min 0.07 | Avg 0.53 | Max 0.99
Coloring options: