Motif HL_67216.8 Version HL_67216.8 of this group appears in releases 3.87 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_008 | 4WF9 | 0.0881 | 1 | X | LSU rRNA | C | 249 | G | 250 | C | 252 | G | 253 | A | 254 | G | 255 | cWW | ntSH | |
| 2 | HL_5J7L_141 | 5J7L | 0.0858 | 1 | DA | LSU rRNA | C | 246 | G | 247 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | ntSH | |
| 3 | HL_7A0S_008 | 7A0S | 0.0788 | 1 | X | LSU rRNA | C | 223 | G | 224 | C | 226 | G | 227 | A | 228 | G | 229 | cWW | ntSH | |
| 4 | HL_8VTW_007 | 8VTW | 0.0000 | 1 | 1A | LSU rRNA | C | 246 | G | 247 | C | 249 | G | 250 | A | 251 | G | 252 | cWW | ntSH | |
| 5 | HL_8C3A_003 | 8C3A | 0.0905 | 1 | 1 | LSU rRNA | C | 89 | G | 90 | C | 92 | G | 93 | A | 94 | G | 95 | cWW | ntSH | |
| 6 | HL_5TBW_003 | 5TBW | 0.0827 | 1 | 1 | LSU rRNA | C | 90 | G | 91 | C | 93 | G | 94 | A | 95 | G | 96 | cWW | tSH | |
| 7 | HL_4V9F_008 | 4V9F | 0.1412 | 1 | 0 | LSU rRNA | C | 217 | C | 218 | C | 220 | G | 221 | A | 222 | G | 223 | cWW | tSH | |
| 8 | HL_1F1T_001 | 1F1T | 0.2066 | 0 | A | MALACHITE GREEN APTAMER RNA | C | 14 | G | 15 | A | 16 | G | 17 | A | 18 | G | 19 | cWW | ntSH | |
| 9 | HL_8C3A_222 | 8C3A | 0.6159 | 1 | GNRA (H) | CM | SSU rRNA | U | 1382 | U | 1383 | C | 1385 | A | 1386 | A | 1387 | G | 1388 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGCGAG | 6 |
| CCGCGAG | 1 |
| CGAGAG | 1 |
| UUUCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGA | 6 |
| CGCGA | 1 |
| GAGA | 1 |
| UUCAA | 1 |
- Annotations
-
- (8)
- GNRA (H) (1)
- Basepair signature
- cWW-tSH-F-F
- Heat map statistics
- Min 0.08 | Avg 0.22 | Max 0.65
Coloring options: