Motif HL_68081.1 Version HL_68081.1 of this group appears in releases 0.3 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3F4G_005 | 3F4G | 0.3458 | 2 | Y | G | 88 | U | 89 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH | |
| 2 | HL_3F4G_002 | 3F4G | 0.2181 | 2 | X | G | 36 | U | 37 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH | |
| 3 | HL_2QBG_013 | 2QBG | 0.1534 | 3 | B | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 4 | HL_4A1B_007 | 4A1B | 0.1040 | 3 | 1 | G | 216 | U | 217 | A | 221 | A | 222 | C | 223 | C | 224 | cWW | tWH | |
| 5 | HL_1S72_012 | 1S72 | 0.0925 | 3 | T-loop with unstacked turn (H) | 0 | G | 334 | U | 335 | A | 339 | A | 340 | C | 341 | C | 342 | cWW | tWH |
| 6 | HL_3V2F_012 | 3V2F | 0.0000 | 3 | A | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 7 | HL_3U5H_007 | 3U5H | 0.1395 | 3 | 5 | G | 216 | U | 217 | A | 221 | A | 222 | U | 223 | C | 224 | cWW | tWH | |
| 8 | HL_2ZJR_011 | 2ZJR | 1.1452 | 3 | X | G | 338 | U | 339 | A | 343 | G | 344 | U | 345 | C | 346 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGACAACC | 2 |
| GUAGAGUC | 1 |
| GUAUAGUC | 1 |
| GUGACAGCC | 1 |
| GUGAAAGCC | 1 |
| GUGAGAAUC | 1 |
| GUGAGAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGACAAC | 2 |
| UAGAGU | 1 |
| UAUAGU | 1 |
| UGACAGC | 1 |
| UGAAAGC | 1 |
| UGAGAAU | 1 |
| UGAGAGU | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_68081.1 | Only in the parent motif |
|---|---|---|---|
| HL_70246.1 Compare | HL_1S72_012, HL_3F4G_002, HL_3F4G_005, HL_2QBG_013 | HL_3V2F_012, HL_3U5H_007, HL_4A1B_007, HL_2ZJR_011 | HL_3PYO_012, HL_3O58_007 |
| HL_55766.1 Compare | HL_2ZJR_011 | HL_3V2F_012, HL_4A1B_007, HL_3F4G_002, HL_3F4G_005, HL_2QBG_013, HL_1S72_012, HL_3U5H_007 |
Children motifs
| Child motif | Common motif instances | Only in HL_68081.1 | Only in the child motif |
|---|---|---|---|
| HL_68081.2 Compare | HL_3V2F_012, HL_4A1B_007, HL_3F4G_002, HL_3F4G_005, HL_2QBG_013, HL_1S72_012, HL_3U5H_007, HL_2ZJR_011 | HL_4FRN_003, HL_4FRG_003 |
- Annotations
-
- (7)
- T-loop with unstacked turn (H) (1)
- Basepair signature
- cWW-R-R-tWH
- Heat map statistics
- Min 0.08 | Avg 0.39 | Max 1.16
Coloring options: