Motif HL_70246.1 Version HL_70246.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3PYO_012 | 3PYO | 0.3150 | 3 | A | 23S ribosomal RNA | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 2 | HL_3F4G_002 | 3F4G | 0.1978 | 2 | X | FMN riboswitch | G | 36 | U | 37 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH | |
| 3 | HL_2QBG_013 | 2QBG | 0.0000 | 3 | B | 23S rRNA | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 4 | HL_1S72_012 | 1S72 | 0.1661 | 3 | T-loop with unstacked turn (H) | 0 | LSU rRNA | G | 334 | U | 335 | A | 339 | A | 340 | C | 341 | C | 342 | cWW | tWH |
| 5 | HL_3O58_007 | 3O58 | 0.1803 | 3 | 1 | 25S ribosomal RNA | G | 216 | U | 217 | A | 221 | A | 222 | U | 223 | C | 224 | cWW | tWH | |
| 6 | HL_3F4G_005 | 3F4G | 0.2517 | 2 | Y | FMN riboswitch | G | 88 | U | 89 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGAAAGCC | 1 |
| GUAUAGUC | 1 |
| GUGACAGCC | 1 |
| GUGACAACC | 1 |
| GUGAGAAUC | 1 |
| GUAGAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAAGC | 1 |
| UAUAGU | 1 |
| UGACAGC | 1 |
| UGACAAC | 1 |
| UGAGAAU | 1 |
| UAGAGU | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_70246.1 | Only in the child motif |
|---|---|---|---|
| HL_68081.1 Compare | HL_1S72_012, HL_3F4G_002, HL_3F4G_005, HL_2QBG_013 | HL_3PYO_012, HL_3O58_007 | HL_3V2F_012, HL_3U5H_007, HL_4A1B_007, HL_2ZJR_011 |
- Annotations
-
- (5)
- T-loop with unstacked turn (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.14 | Avg 0.21 | Max 0.45
Coloring options: