Motif HL_68081.3 Version HL_68081.3 of this group appears in releases 1.1 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4IOA_011 | 4IOA | 0.9002 | 1 | T-loop with unstacked turn | X | LSU rRNA | G | 338 | U | 339 | A | 341 | G | 342 | A | 343 | G | 344 | U | 345 | C | 346 | cWW | |
| 2 | HL_4FRG_003 | 4FRG | 0.2746 | 1 | T-loop with unstacked turn | B | cobalamin riboswitch aptamer domain | G | 58 | U | 59 | A | 61 | U | 62 | A | 63 | C | 64 | U | 65 | C | 66 | cWW | tWH |
| 3 | HL_4FRN_003 | 4FRN | 0.2705 | 1 | A | Cobalamin riboswitch aptamer domain | G | 56 | U | 57 | A | 59 | U | 60 | A | 61 | C | 62 | U | 63 | C | 64 | cWW | tWH | |
| 4 | HL_3F4G_002 | 3F4G | 0.2404 | 0 | X | FMN riboswitch | G | 36 | U | 37 | A | 38 | U | 39 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH | |
| 5 | HL_3F4G_005 | 3F4G | 0.0000 | 0 | Y | FMN riboswitch | G | 88 | U | 89 | A | 90 | G | 91 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH | |
| 6 | HL_3V2F_012 | 3V2F | 0.3666 | 1 | A | 23S Ribosomal RNA | G | 327 | U | 328 | A | 330 | A | 331 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 7 | HL_4A1B_007 | 4A1B | 0.4419 | 1 | 1 | 26S RRNA | G | 216 | U | 217 | A | 219 | C | 220 | A | 221 | A | 222 | C | 223 | C | 224 | cWW | tWH | |
| 8 | HL_1S72_012 | 1S72 | 0.5756 | 1 | T-loop with unstacked turn (H) | 0 | LSU rRNA | G | 334 | U | 335 | A | 337 | C | 338 | A | 339 | A | 340 | C | 341 | C | 342 | cWW | tWH |
| 9 | HL_2QBG_013 | 2QBG | 0.4882 | 1 | B | 23S rRNA | G | 327 | U | 328 | A | 330 | C | 331 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 10 | HL_3U5H_007 | 3U5H | 0.6668 | 1 | 5 | 25S rRNA | G | 216 | U | 217 | A | 219 | G | 220 | A | 221 | A | 222 | U | 223 | C | 224 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAUACUC | 2 |
| GUGACAACC | 2 |
| GUGAGAGUC | 1 |
| GUAUAGUC | 1 |
| GUAGAGUC | 1 |
| GUGAAAGCC | 1 |
| GUGACAGCC | 1 |
| GUGAGAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAUACU | 2 |
| UGACAAC | 2 |
| UGAGAGU | 1 |
| UAUAGU | 1 |
| UAGAGU | 1 |
| UGAAAGC | 1 |
| UGACAGC | 1 |
| UGAGAAU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_68081.3 | Only in the parent motif |
|---|---|---|---|
| HL_68081.2 Compare | HL_3V2F_012, HL_4A1B_007, HL_3F4G_002, HL_3F4G_005, HL_2QBG_013, HL_4FRN_003, HL_4FRG_003, HL_1S72_012, HL_3U5H_007 | HL_4IOA_011 | HL_2ZJR_011 |
Children motifs
| Child motif | Common motif instances | Only in HL_68081.3 | Only in the child motif |
|---|---|---|---|
| HL_68081.4 Compare | HL_4A1B_007, HL_3F4G_002, HL_3F4G_005, HL_2QBG_013, HL_4FRN_003, HL_4FRG_003, HL_1S72_012, HL_3U5H_007, HL_4IOA_011 | HL_3V2F_012 | HL_4NVV_011 |
- Annotations
-
- (7)
- T-loop with unstacked turn (2)
- T-loop with unstacked turn (H) (1)
- Basepair signature
- cWW-R-R-tWH-R-R
- Heat map statistics
- Min 0.12 | Avg 0.51 | Max 1.08
Coloring options: