Motif HL_68304.6 Version HL_68304.6 of this group appears in releases 3.48 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3KTW_001 | 3KTW | 0.8658 | 0 | GNRA | C | SRP RNA | U | 163 | G | 164 | G | 165 | A | 166 | G | 167 | G | 168 | cWW | |
| 2 | HL_4WF9_031 | 4WF9 | 0.7503 | 0 | GNRA | X | LSU rRNA | C | 1260 | G | 1261 | U | 1262 | A | 1263 | A | 1264 | G | 1265 | cWW | |
| 3 | HL_7A0S_031 | 7A0S | 0.7979 | 0 | GNRA | X | LSU rRNA | C | 1235 | G | 1236 | G | 1237 | A | 1238 | A | 1239 | G | 1240 | cWW | |
| 4 | HL_5J7L_026 | 5J7L | 0.4944 | 1 | GNRA | AA | SSU rRNA | U | 1165 | G | 1166 | A | 1167 | A | 1169 | A | 1170 | A | 1171 | cWW | tSH |
| 5 | HL_6ASO_001 | 6ASO | 0.3411 | 1 | GNRA | I | U6 snRNA | U | 70 | G | 71 | C | 72 | U | 74 | A | 75 | A | 76 | ncWW | tSH |
| 6 | HL_5J7L_148 | 5J7L | 0.3130 | 1 | GNRA | DA | LSU rRNA | C | 487 | G | 488 | G | 489 | G | 491 | A | 492 | G | 493 | cWW | tSH |
| 7 | HL_4LFB_012 | 4LFB | 0.0000 | 1 | GNRA | A | SSU rRNA | C | 458 | G | 459 | A | 460 | G | 462 | A | 463 | G | 474 | cWW | tSH |
| 8 | HL_6CZR_083 | 6CZR | 0.2189 | 1 | GNRA | 1a | SSU rRNA | C | 453 | G | 454 | A | 455 | G | 457 | A | 458 | G | 459 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACGAG | 2 |
| UGGAGG | 1 |
| CGUAAG | 1 |
| CGGAAG | 1 |
| UGAUAAA | 1 |
| UGCAUAA | 1 |
| CGGCGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACGA | 2 |
| GGAG | 1 |
| GUAA | 1 |
| GGAA | 1 |
| GAUAA | 1 |
| GCAUA | 1 |
| GGCGA | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA (8)
- Basepair signature
- cWW-tSH-R-R
- Heat map statistics
- Min 0.22 | Avg 0.55 | Max 0.98
Coloring options: