Motif HL_68642.1 Version HL_68642.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DFE_020 | 9DFE | 0.3703 | 0 | GNRA wlth tandem sheared | 1A | LSU rRNA | G | 712 | G | 713 | U | 714 | G | 715 | A | 716 | G | 717 | A | 718 | C | 719 | cWW | ntSH | ||
| 2 | HL_3HHN_010 | 3HHN | 0.3005 | 0 | GNRA wlth tandem sheared | E | Class I ligase ribozyme, self-ligation product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH | ||
| 3 | HL_4V9F_032 | 4V9F | 0.2179 | 1 | Anticodon loop related | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH | |
| 4 | HL_5UD5_002 | 5UD5 | 0.1886 | 1 | tRNA anticodon loop | C | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ntSH | |
| 5 | HL_9DE7_001 | 9DE7 | 0.0000 | 0 | GNRA with extra near cWW | A | RNA (58-MER) | C | 29 | C | 30 | G | 31 | A | 32 | A | 33 | A | 34 | A | 35 | G | 36 | cWW | ntSH | ||
| 6 | HL_7PMQ_003 | 7PMQ | 0.3171 | 0 | Anticodon loop related | F | RNA (42-MER) | G | 8 | U | 9 | U | 10 | U | 11 | C | 12 | G | 13 | A | 14 | C | 15 | cWW | |||
| 7 | HL_5J8B_119 | 5J8B | 0.5441 | 1 | tRNA anticodon loop (H) | y | tRNA | A | 31 | PSU | 32 | G | 34 | A | 35 | A | 36 | MIA | 37 | A | 38 | PSU | 39 | cWW | |||
| 8 | HL_9E6Q_036 | 9E6Q | 0.6915 | 0 | 1 | LSU rRNA | A | 1600 | C | 1601 | U | 1602 | G | 1603 | C | 1604 | C | 1605 | G | 1606 | U | 1607 | cWW | ntWW | |||
| 9 | HL_9AXU_034 | 9AXU | 0.7689 | 1 | 2 | LSU rRNA | G | 1715 | U | 1716 | U | 1717 | C | 1718 | U | 1719 | C | 1720 | U | 1721 | U | 1723 | cWW | ||||
| 10 | HL_8P9A_148 | 8P9A | 0.7467 | 1 | Pseudoknot geometry | AR | LSU rRNA | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW | |||
| 11 | HL_8OI5_033 | 8OI5 | 0.7545 | 1 | 1 | LSU rRNA | G | 1676 | U | 1677 | U | 1678 | A | 1679 | U | 1680 | C | 1681 | U | 1682 | U | 1684 | cWW | ncwW | |||
| 12 | HL_8GLP_121 | 8GLP | 0.9138 | 1 | L5 | LSU rRNA | G | 2624 | U | 2625 | U | 2626 | C | 2627 | U | 2628 | C | 2629 | U | 2630 | PSU | 2632 | cWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAUCUUU | 2 |
| GGUGAGAC | 1 |
| GUUAAAAC | 1 |
| ACUCAUACU | 1 |
| ACUCUAAAU | 1 |
| CCGAAAAG | 1 |
| GUUUCGAC | 1 |
| A(PSU)UGAA(MIA)A(PSU) | 1 |
| ACUGCCGU | 1 |
| GUUCUCUUU | 1 |
| GUUCUCUU(PSU) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCUCUU | 2 |
| UUAUCUU | 2 |
| GUGAGA | 1 |
| UUAAAA | 1 |
| CUCAUAC | 1 |
| CUCUAAA | 1 |
| CGAAAA | 1 |
| UUUCGA | 1 |
| (PSU)UGAA(MIA)A | 1 |
| CUGCCG | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- GNRA wlth tandem sheared (2)
- Anticodon loop related (2)
- tRNA anticodon loop (H) (1)
- tRNA anticodon loop (1)
- Pseudoknot geometry (1)
- GNRA with extra near cWW (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.55 | Max 0.98
Coloring options: