Motif HL_69353.5 Version HL_69353.5 of this group appears in releases 3.18 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	1-3
1	HL_6JOO_002	6JOO	0.2176	1	Mini UNCG	B	Guide RNA	C	58	C	60	G	61	cWW
2	HL_5TBW_040	5TBW	0.1523	2	Mini UNCG	1	LSU rRNA	C	1792	U	1795	G	1796	cWW
3	HL_4IOA_038	4IOA	0.1588	1	Mini UNCG (H)	X	LSU rRNA	C	1581	A	1583	G	1584	cWW
4	HL_4Y4O_141	4Y4O	0.1017	1		2A	LSU rRNA	C	1565	A	1567	G	1568	cWW
5	HL_5J7L_172	5J7L	0.1048	1	Mini UNCG	DA	LSU rRNA	C	1565	G	1567	G	1568	cWW
6	HL_5VW1_002	5VW1	0.1008	1	Mini UNCG	C	tracrRNA	C	55	A	57	G	58	cWW
7	HL_5FQ5_002	5FQ5	0.0875	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
8	HL_5B2T_002	5B2T	0.0497	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
9	HL_4ZT0_005	4ZT0	0.0000	1	Mini UNCG	D	tracrRNA	C	55	A	57	G	58	cWW
10	HL_2F8K_001	2F8K	0.0995	1	Mini UNCG	B	RNA (16-mer)	U	6	G	8	A	9	cWW
11	HL_5U30_001	5U30	0.1500	1	Mini UNCG	B	sgRNA	U	4	G	6	A	7	cWW
12	HL_5F9R_002	5F9R	0.1675	1	Mini UNCG	A	tracrRNA	C	73	A	75	G	76	cWW
13	HL_4V88_192	4V88	0.2488	1	Mini UNCG	A6	SSU rRNA	C	276	U	278	G	279	cWW
14	HL_5SWD_005	5SWD	0.2610	3	Mini UNCG	B	Purine riboswitch	U	47	C	50	A	52	cWW
15	HL_4V9F_041	4V9F	0.2186	2	Mini UNCG	0	LSU rRNA	C	1651	U	1654	G	1655	cWW
16	HL_5TBW_071	5TBW	0.2284	1	Mini UNCG	1	LSU rRNA	C	3350	U	3352	G	3353	cWW
17	HL_4WF9_037	4WF9	0.4374	1	Mini UNCG	X	LSU rRNA	C	1612	A	1614	G	1615	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAG	5
CAAG	2
CUUG	2
CUCG	1
CCGUG	1
CAGG	1
UUGA	1
UAGA	1
UUUCUA	1
CCAUG	1
CGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UA	5
AA	2
AG	2
UU	2
UC	1
CGU	1
UG	1
UUCU	1
CAU	1
GA	1

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Mini UNCG (15)
Mini UNCG (H) (1)
(1)
Basepair signature: cWW
Heat map statistics: Min 0.04 | Avg 0.22 | Max 0.55

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