RNA 3D Hub //

Motif HL_69353.6 Version HL_69353.6 of this group appears in releases 3.48 to 3.53

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_6JOO_0026JOO0.21761Mini UNCGBGuide RNAC58C60G61cWW
2 HL_5VW1_0025VW10.10081Mini UNCGC tracrRNAC55A57G58cWW
3 HL_5FQ5_0025FQ50.08751Mini UNCGA tracrRNAC55A57G58cWW
4 HL_5B2T_0025B2T0.04971Mini UNCGA tracrRNAC55A57G58cWW
5 HL_4ZT0_0054ZT00.00001Mini UNCGD tracrRNAC55A57G58cWW
6 HL_4Y4O_1414Y4O0.101712A LSU rRNAC1565A1567G1568cWW
7 HL_5J7L_1725J7L0.10481Mini UNCGDA LSU rRNAC1565G1567G1568cWW
8 HL_2F8K_0012F8K0.09951Mini UNCGBRNA (16-mer)U6G8A9cWW
9 HL_5TBW_0405TBW0.15232Mini UNCG1 LSU rRNAC1792U1795G1796cWW
10 HL_4V9F_0414V9F0.21862Mini UNCG0 LSU rRNAC1651U1654G1655cWW
11 HL_5SWD_0055SWD0.26103Mini UNCGBPurine riboswitchU47C50A52cWW
12 HL_4V88_1924V880.24881Mini UNCGA6 SSU rRNAC276U278G279cWW
13 HL_5F9R_0025F9R0.16751Mini UNCGA tracrRNAC73A75G76cWW
14 HL_7A0S_0397A0S0.16741Mini UNCGX LSU rRNAC1581A1583G1584cWW
15 HL_5U30_0015U300.15001Mini UNCGBsgRNAU4G6A7cWW
16 HL_5TBW_0715TBW0.22841Mini UNCG1 LSU rRNAC3350U3352G3353cWW
17 HL_4WF9_0374WF90.43741Mini UNCGX LSU rRNAC1612A1614G1615cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAG5
CAAG2
CUUG2
CUCG1
CAGG1
UUGA1
CCGUG1
CCAUG1
UUUCUA1
UAGA1
CGAG1
Non-Watson-Crick part of the motif
SequenceCounts
UA5
AA2
AG2
UU2
UC1
UG1
CGU1
CAU1
UUCU1
GA1

Release history

Release3.483.493.503.513.523.53
Date2021-08-182021-09-152021-10-132021-11-102021-12-082022-01-05
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Mini UNCG (16)
  • (1)
    • Basepair signature
    cWW
    Heat map statistics
    Min 0.04 | Avg 0.22 | Max 0.55
    Help

    Coloring options:

    HL_6JOO_002:HL_6JOO_002 = 0HL_6JOO_002:HL_5VW1_002 = 0.211HL_6JOO_002:HL_5FQ5_002 = 0.2006HL_6JOO_002:HL_5B2T_002 = 0.1911HL_6JOO_002:HL_4ZT0_005 = 0.2176HL_6JOO_002:HL_4Y4O_141 = 0.2504HL_6JOO_002:HL_5J7L_172 = 0.2289HL_6JOO_002:HL_2F8K_001 = 0.256HL_6JOO_002:HL_5TBW_040 = 0.2974HL_6JOO_002:HL_4V9F_041 = 0.3879HL_6JOO_002:HL_5SWD_005 = 0.4278HL_6JOO_002:HL_4V88_192 = 0.4298HL_6JOO_002:HL_5F9R_002 = 0.3531HL_6JOO_002:HL_7A0S_039 = 0.3257HL_6JOO_002:HL_5U30_001 = 0.3022HL_6JOO_002:HL_5TBW_071 = 0.3353HL_6JOO_002:HL_4WF9_037 = 0.4455HL_5VW1_002:HL_6JOO_002 = 0.211HL_5VW1_002:HL_5VW1_002 = 0HL_5VW1_002:HL_5FQ5_002 = 0.0626HL_5VW1_002:HL_5B2T_002 = 0.0697HL_5VW1_002:HL_4ZT0_005 = 0.1008HL_5VW1_002:HL_4Y4O_141 = 0.1145HL_5VW1_002:HL_5J7L_172 = 0.0916HL_5VW1_002:HL_2F8K_001 = 0.127HL_5VW1_002:HL_5TBW_040 = 0.1963HL_5VW1_002:HL_4V9F_041 = 0.2903HL_5VW1_002:HL_5SWD_005 = 0.3326HL_5VW1_002:HL_4V88_192 = 0.3082HL_5VW1_002:HL_5F9R_002 = 0.2192HL_5VW1_002:HL_7A0S_039 = 0.2189HL_5VW1_002:HL_5U30_001 = 0.2301HL_5VW1_002:HL_5TBW_071 = 0.3035HL_5VW1_002:HL_4WF9_037 = 0.4814HL_5FQ5_002:HL_6JOO_002 = 0.2006HL_5FQ5_002:HL_5VW1_002 = 0.0626HL_5FQ5_002:HL_5FQ5_002 = 0HL_5FQ5_002:HL_5B2T_002 = 0.0497HL_5FQ5_002:HL_4ZT0_005 = 0.0875HL_5FQ5_002:HL_4Y4O_141 = 0.1124HL_5FQ5_002:HL_5J7L_172 = 0.0943HL_5FQ5_002:HL_2F8K_001 = 0.1071HL_5FQ5_002:HL_5TBW_040 = 0.1995HL_5FQ5_002:HL_4V9F_041 = 0.2722HL_5FQ5_002:HL_5SWD_005 = 0.3177HL_5FQ5_002:HL_4V88_192 = 0.2874HL_5FQ5_002:HL_5F9R_002 = 0.192HL_5FQ5_002:HL_7A0S_039 = 0.1854HL_5FQ5_002:HL_5U30_001 = 0.1981HL_5FQ5_002:HL_5TBW_071 = 0.2659HL_5FQ5_002:HL_4WF9_037 = 0.4693HL_5B2T_002:HL_6JOO_002 = 0.1911HL_5B2T_002:HL_5VW1_002 = 0.0697HL_5B2T_002:HL_5FQ5_002 = 0.0497HL_5B2T_002:HL_5B2T_002 = 0HL_5B2T_002:HL_4ZT0_005 = 0.0497HL_5B2T_002:HL_4Y4O_141 = 0.0988HL_5B2T_002:HL_5J7L_172 = 0.0878HL_5B2T_002:HL_2F8K_001 = 0.1011HL_5B2T_002:HL_5TBW_040 = 0.1645HL_5B2T_002:HL_4V9F_041 = 0.2464HL_5B2T_002:HL_5SWD_005 = 0.293HL_5B2T_002:HL_4V88_192 = 0.2747HL_5B2T_002:HL_5F9R_002 = 0.1871HL_5B2T_002:HL_7A0S_039 = 0.1838HL_5B2T_002:HL_5U30_001 = 0.1805HL_5B2T_002:HL_5TBW_071 = 0.2437HL_5B2T_002:HL_4WF9_037 = 0.4384HL_4ZT0_005:HL_6JOO_002 = 0.2176HL_4ZT0_005:HL_5VW1_002 = 0.1008HL_4ZT0_005:HL_5FQ5_002 = 0.0875HL_4ZT0_005:HL_5B2T_002 = 0.0497HL_4ZT0_005:HL_4ZT0_005 = 0HL_4ZT0_005:HL_4Y4O_141 = 0.1017HL_4ZT0_005:HL_5J7L_172 = 0.1048HL_4ZT0_005:HL_2F8K_001 = 0.0995HL_4ZT0_005:HL_5TBW_040 = 0.1523HL_4ZT0_005:HL_4V9F_041 = 0.2186HL_4ZT0_005:HL_5SWD_005 = 0.261HL_4ZT0_005:HL_4V88_192 = 0.2488HL_4ZT0_005:HL_5F9R_002 = 0.1675HL_4ZT0_005:HL_7A0S_039 = 0.1674HL_4ZT0_005:HL_5U30_001 = 0.15HL_4ZT0_005:HL_5TBW_071 = 0.2284HL_4ZT0_005:HL_4WF9_037 = 0.4374HL_4Y4O_141:HL_6JOO_002 = 0.2504HL_4Y4O_141:HL_5VW1_002 = 0.1145HL_4Y4O_141:HL_5FQ5_002 = 0.1124HL_4Y4O_141:HL_5B2T_002 = 0.0988HL_4Y4O_141:HL_4ZT0_005 = 0.1017HL_4Y4O_141:HL_4Y4O_141 = 0HL_4Y4O_141:HL_5J7L_172 = 0.0428HL_4Y4O_141:HL_2F8K_001 = 0.1194HL_4Y4O_141:HL_5TBW_040 = 0.1674HL_4Y4O_141:HL_4V9F_041 = 0.2263HL_4Y4O_141:HL_5SWD_005 = 0.2871HL_4Y4O_141:HL_4V88_192 = 0.2632HL_4Y4O_141:HL_5F9R_002 = 0.1749HL_4Y4O_141:HL_7A0S_039 = 0.177HL_4Y4O_141:HL_5U30_001 = 0.1897HL_4Y4O_141:HL_5TBW_071 = 0.2796HL_4Y4O_141:HL_4WF9_037 = 0.447HL_5J7L_172:HL_6JOO_002 = 0.2289HL_5J7L_172:HL_5VW1_002 = 0.0916HL_5J7L_172:HL_5FQ5_002 = 0.0943HL_5J7L_172:HL_5B2T_002 = 0.0878HL_5J7L_172:HL_4ZT0_005 = 0.1048HL_5J7L_172:HL_4Y4O_141 = 0.0428HL_5J7L_172:HL_5J7L_172 = 0HL_5J7L_172:HL_2F8K_001 = 0.1109HL_5J7L_172:HL_5TBW_040 = 0.1756HL_5J7L_172:HL_4V9F_041 = 0.2487HL_5J7L_172:HL_5SWD_005 = 0.2997HL_5J7L_172:HL_4V88_192 = 0.2796HL_5J7L_172:HL_5F9R_002 = 0.1965HL_5J7L_172:HL_7A0S_039 = 0.1919HL_5J7L_172:HL_5U30_001 = 0.2036HL_5J7L_172:HL_5TBW_071 = 0.2877HL_5J7L_172:HL_4WF9_037 = 0.4617HL_2F8K_001:HL_6JOO_002 = 0.256HL_2F8K_001:HL_5VW1_002 = 0.127HL_2F8K_001:HL_5FQ5_002 = 0.1071HL_2F8K_001:HL_5B2T_002 = 0.1011HL_2F8K_001:HL_4ZT0_005 = 0.0995HL_2F8K_001:HL_4Y4O_141 = 0.1194HL_2F8K_001:HL_5J7L_172 = 0.1109HL_2F8K_001:HL_2F8K_001 = 0HL_2F8K_001:HL_5TBW_040 = 0.153HL_2F8K_001:HL_4V9F_041 = 0.2146HL_2F8K_001:HL_5SWD_005 = 0.241HL_2F8K_001:HL_4V88_192 = 0.2397HL_2F8K_001:HL_5F9R_002 = 0.1747HL_2F8K_001:HL_7A0S_039 = 0.188HL_2F8K_001:HL_5U30_001 = 0.1507HL_2F8K_001:HL_5TBW_071 = 0.2333HL_2F8K_001:HL_4WF9_037 = 0.4513HL_5TBW_040:HL_6JOO_002 = 0.2974HL_5TBW_040:HL_5VW1_002 = 0.1963HL_5TBW_040:HL_5FQ5_002 = 0.1995HL_5TBW_040:HL_5B2T_002 = 0.1645HL_5TBW_040:HL_4ZT0_005 = 0.1523HL_5TBW_040:HL_4Y4O_141 = 0.1674HL_5TBW_040:HL_5J7L_172 = 0.1756HL_5TBW_040:HL_2F8K_001 = 0.153HL_5TBW_040:HL_5TBW_040 = 0HL_5TBW_040:HL_4V9F_041 = 0.1575HL_5TBW_040:HL_5SWD_005 = 0.2102HL_5TBW_040:HL_4V88_192 = 0.2506HL_5TBW_040:HL_5F9R_002 = 0.2285HL_5TBW_040:HL_7A0S_039 = 0.2388HL_5TBW_040:HL_5U30_001 = 0.2189HL_5TBW_040:HL_5TBW_071 = 0.2192HL_5TBW_040:HL_4WF9_037 = 0.376HL_4V9F_041:HL_6JOO_002 = 0.3879HL_4V9F_041:HL_5VW1_002 = 0.2903HL_4V9F_041:HL_5FQ5_002 = 0.2722HL_4V9F_041:HL_5B2T_002 = 0.2464HL_4V9F_041:HL_4ZT0_005 = 0.2186HL_4V9F_041:HL_4Y4O_141 = 0.2263HL_4V9F_041:HL_5J7L_172 = 0.2487HL_4V9F_041:HL_2F8K_001 = 0.2146HL_4V9F_041:HL_5TBW_040 = 0.1575HL_4V9F_041:HL_4V9F_041 = 0HL_4V9F_041:HL_5SWD_005 = 0.1253HL_4V9F_041:HL_4V88_192 = 0.1611HL_4V9F_041:HL_5F9R_002 = 0.1952HL_4V9F_041:HL_7A0S_039 = 0.1908HL_4V9F_041:HL_5U30_001 = 0.2068HL_4V9F_041:HL_5TBW_071 = 0.2039HL_4V9F_041:HL_4WF9_037 = 0.4287HL_5SWD_005:HL_6JOO_002 = 0.4278HL_5SWD_005:HL_5VW1_002 = 0.3326HL_5SWD_005:HL_5FQ5_002 = 0.3177HL_5SWD_005:HL_5B2T_002 = 0.293HL_5SWD_005:HL_4ZT0_005 = 0.261HL_5SWD_005:HL_4Y4O_141 = 0.2871HL_5SWD_005:HL_5J7L_172 = 0.2997HL_5SWD_005:HL_2F8K_001 = 0.241HL_5SWD_005:HL_5TBW_040 = 0.2102HL_5SWD_005:HL_4V9F_041 = 0.1253HL_5SWD_005:HL_5SWD_005 = 0HL_5SWD_005:HL_4V88_192 = 0.1516HL_5SWD_005:HL_5F9R_002 = 0.2328HL_5SWD_005:HL_7A0S_039 = 0.2379HL_5SWD_005:HL_5U30_001 = 0.2183HL_5SWD_005:HL_5TBW_071 = 0.2341HL_5SWD_005:HL_4WF9_037 = 0.4982HL_4V88_192:HL_6JOO_002 = 0.4298HL_4V88_192:HL_5VW1_002 = 0.3082HL_4V88_192:HL_5FQ5_002 = 0.2874HL_4V88_192:HL_5B2T_002 = 0.2747HL_4V88_192:HL_4ZT0_005 = 0.2488HL_4V88_192:HL_4Y4O_141 = 0.2632HL_4V88_192:HL_5J7L_172 = 0.2796HL_4V88_192:HL_2F8K_001 = 0.2397HL_4V88_192:HL_5TBW_040 = 0.2506HL_4V88_192:HL_4V9F_041 = 0.1611HL_4V88_192:HL_5SWD_005 = 0.1516HL_4V88_192:HL_4V88_192 = 0HL_4V88_192:HL_5F9R_002 = 0.1409HL_4V88_192:HL_7A0S_039 = 0.1606HL_4V88_192:HL_5U30_001 = 0.2138HL_4V88_192:HL_5TBW_071 = 0.244HL_4V88_192:HL_4WF9_037 = 0.5452HL_5F9R_002:HL_6JOO_002 = 0.3531HL_5F9R_002:HL_5VW1_002 = 0.2192HL_5F9R_002:HL_5FQ5_002 = 0.192HL_5F9R_002:HL_5B2T_002 = 0.1871HL_5F9R_002:HL_4ZT0_005 = 0.1675HL_5F9R_002:HL_4Y4O_141 = 0.1749HL_5F9R_002:HL_5J7L_172 = 0.1965HL_5F9R_002:HL_2F8K_001 = 0.1747HL_5F9R_002:HL_5TBW_040 = 0.2285HL_5F9R_002:HL_4V9F_041 = 0.1952HL_5F9R_002:HL_5SWD_005 = 0.2328HL_5F9R_002:HL_4V88_192 = 0.1409HL_5F9R_002:HL_5F9R_002 = 0HL_5F9R_002:HL_7A0S_039 = 0.1001HL_5F9R_002:HL_5U30_001 = 0.1671HL_5F9R_002:HL_5TBW_071 = 0.2468HL_5F9R_002:HL_4WF9_037 = 0.5066HL_7A0S_039:HL_6JOO_002 = 0.3257HL_7A0S_039:HL_5VW1_002 = 0.2189HL_7A0S_039:HL_5FQ5_002 = 0.1854HL_7A0S_039:HL_5B2T_002 = 0.1838HL_7A0S_039:HL_4ZT0_005 = 0.1674HL_7A0S_039:HL_4Y4O_141 = 0.177HL_7A0S_039:HL_5J7L_172 = 0.1919HL_7A0S_039:HL_2F8K_001 = 0.188HL_7A0S_039:HL_5TBW_040 = 0.2388HL_7A0S_039:HL_4V9F_041 = 0.1908HL_7A0S_039:HL_5SWD_005 = 0.2379HL_7A0S_039:HL_4V88_192 = 0.1606HL_7A0S_039:HL_5F9R_002 = 0.1001HL_7A0S_039:HL_7A0S_039 = 0HL_7A0S_039:HL_5U30_001 = 0.1851HL_7A0S_039:HL_5TBW_071 = 0.2482HL_7A0S_039:HL_4WF9_037 = 0.5248HL_5U30_001:HL_6JOO_002 = 0.3022HL_5U30_001:HL_5VW1_002 = 0.2301HL_5U30_001:HL_5FQ5_002 = 0.1981HL_5U30_001:HL_5B2T_002 = 0.1805HL_5U30_001:HL_4ZT0_005 = 0.15HL_5U30_001:HL_4Y4O_141 = 0.1897HL_5U30_001:HL_5J7L_172 = 0.2036HL_5U30_001:HL_2F8K_001 = 0.1507HL_5U30_001:HL_5TBW_040 = 0.2189HL_5U30_001:HL_4V9F_041 = 0.2068HL_5U30_001:HL_5SWD_005 = 0.2183HL_5U30_001:HL_4V88_192 = 0.2138HL_5U30_001:HL_5F9R_002 = 0.1671HL_5U30_001:HL_7A0S_039 = 0.1851HL_5U30_001:HL_5U30_001 = 0HL_5U30_001:HL_5TBW_071 = 0.1999HL_5U30_001:HL_4WF9_037 = 0.4419HL_5TBW_071:HL_6JOO_002 = 0.3353HL_5TBW_071:HL_5VW1_002 = 0.3035HL_5TBW_071:HL_5FQ5_002 = 0.2659HL_5TBW_071:HL_5B2T_002 = 0.2437HL_5TBW_071:HL_4ZT0_005 = 0.2284HL_5TBW_071:HL_4Y4O_141 = 0.2796HL_5TBW_071:HL_5J7L_172 = 0.2877HL_5TBW_071:HL_2F8K_001 = 0.2333HL_5TBW_071:HL_5TBW_040 = 0.2192HL_5TBW_071:HL_4V9F_041 = 0.2039HL_5TBW_071:HL_5SWD_005 = 0.2341HL_5TBW_071:HL_4V88_192 = 0.244HL_5TBW_071:HL_5F9R_002 = 0.2468HL_5TBW_071:HL_7A0S_039 = 0.2482HL_5TBW_071:HL_5U30_001 = 0.1999HL_5TBW_071:HL_5TBW_071 = 0HL_5TBW_071:HL_4WF9_037 = 0.3867HL_4WF9_037:HL_6JOO_002 = 0.4455HL_4WF9_037:HL_5VW1_002 = 0.4814HL_4WF9_037:HL_5FQ5_002 = 0.4693HL_4WF9_037:HL_5B2T_002 = 0.4384HL_4WF9_037:HL_4ZT0_005 = 0.4374HL_4WF9_037:HL_4Y4O_141 = 0.447HL_4WF9_037:HL_5J7L_172 = 0.4617HL_4WF9_037:HL_2F8K_001 = 0.4513HL_4WF9_037:HL_5TBW_040 = 0.376HL_4WF9_037:HL_4V9F_041 = 0.4287HL_4WF9_037:HL_5SWD_005 = 0.4982HL_4WF9_037:HL_4V88_192 = 0.5452HL_4WF9_037:HL_5F9R_002 = 0.5066HL_4WF9_037:HL_7A0S_039 = 0.5248HL_4WF9_037:HL_5U30_001 = 0.4419HL_4WF9_037:HL_5TBW_071 = 0.3867HL_4WF9_037:HL_4WF9_037 = 0HL_6JOO_002HL_5VW1_002HL_5FQ5_002HL_5B2T_002HL_4ZT0_005HL_4Y4O_141HL_5J7L_172HL_2F8K_001HL_5TBW_040HL_4V9F_041HL_5SWD_005HL_4V88_192HL_5F9R_002HL_7A0S_039HL_5U30_001HL_5TBW_071HL_4WF9_037Discrepancy0.000.100.200.300.400.50
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