Motif HL_69353.6 Version HL_69353.6 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6JOO_002 | 6JOO | 0.2176 | 1 | Mini UNCG | B | Guide RNA | C | 58 | C | 60 | G | 61 | cWW |
| 2 | HL_5VW1_002 | 5VW1 | 0.1008 | 1 | Mini UNCG | C | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 3 | HL_5FQ5_002 | 5FQ5 | 0.0875 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 4 | HL_5B2T_002 | 5B2T | 0.0497 | 1 | Mini UNCG | A | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 5 | HL_4ZT0_005 | 4ZT0 | 0.0000 | 1 | Mini UNCG | D | tracrRNA | C | 55 | A | 57 | G | 58 | cWW |
| 6 | HL_4Y4O_141 | 4Y4O | 0.1017 | 1 | 2A | LSU rRNA | C | 1565 | A | 1567 | G | 1568 | cWW | |
| 7 | HL_5J7L_172 | 5J7L | 0.1048 | 1 | Mini UNCG | DA | LSU rRNA | C | 1565 | G | 1567 | G | 1568 | cWW |
| 8 | HL_2F8K_001 | 2F8K | 0.0995 | 1 | Mini UNCG | B | RNA (16-mer) | U | 6 | G | 8 | A | 9 | cWW |
| 9 | HL_5TBW_040 | 5TBW | 0.1523 | 2 | Mini UNCG | 1 | LSU rRNA | C | 1792 | U | 1795 | G | 1796 | cWW |
| 10 | HL_4V9F_041 | 4V9F | 0.2186 | 2 | Mini UNCG | 0 | LSU rRNA | C | 1651 | U | 1654 | G | 1655 | cWW |
| 11 | HL_5SWD_005 | 5SWD | 0.2610 | 3 | Mini UNCG | B | Purine riboswitch | U | 47 | C | 50 | A | 52 | cWW |
| 12 | HL_4V88_192 | 4V88 | 0.2488 | 1 | Mini UNCG | A6 | SSU rRNA | C | 276 | U | 278 | G | 279 | cWW |
| 13 | HL_5F9R_002 | 5F9R | 0.1675 | 1 | Mini UNCG | A | tracrRNA | C | 73 | A | 75 | G | 76 | cWW |
| 14 | HL_7A0S_039 | 7A0S | 0.1674 | 1 | Mini UNCG | X | LSU rRNA | C | 1581 | A | 1583 | G | 1584 | cWW |
| 15 | HL_5U30_001 | 5U30 | 0.1500 | 1 | Mini UNCG | B | sgRNA | U | 4 | G | 6 | A | 7 | cWW |
| 16 | HL_5TBW_071 | 5TBW | 0.2284 | 1 | Mini UNCG | 1 | LSU rRNA | C | 3350 | U | 3352 | G | 3353 | cWW |
| 17 | HL_4WF9_037 | 4WF9 | 0.4374 | 1 | Mini UNCG | X | LSU rRNA | C | 1612 | A | 1614 | G | 1615 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG | 5 |
| CAAG | 2 |
| CUUG | 2 |
| CUCG | 1 |
| CAGG | 1 |
| UUGA | 1 |
| CCGUG | 1 |
| CCAUG | 1 |
| UUUCUA | 1 |
| UAGA | 1 |
| CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA | 5 |
| AA | 2 |
| AG | 2 |
| UU | 2 |
| UC | 1 |
| UG | 1 |
| CGU | 1 |
| CAU | 1 |
| UUCU | 1 |
| GA | 1 |
- Annotations
-
- Mini UNCG (16)
- (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.04 | Avg 0.22 | Max 0.55
Coloring options: