Motif HL_69858.1 Version HL_69858.1 of this group appears in releases 3.87 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8J72_001 | 8J72 | 0.4169 | 2 | Mini UNCG related | C | C | 4 | A | 7 | G | 8 | cWW |
| 2 | HL_4ZLD_001 | 4ZLD | 0.0689 | 2 | Mini UNCG | B | C | 7 | G | 9 | G | 11 | cWW |
| 3 | HL_4Z31_001 | 4Z31 | 0.0534 | 2 | Mini UNCG | E | C | 6 | G | 8 | G | 10 | cWW |
| 4 | HL_4QIL_002 | 4QIL | 0.0000 | 2 | Mini UNCG | C | C | 8 | G | 10 | G | 12 | cWW |
| 5 | HL_4QI2_003 | 4QI2 | 0.1174 | 2 | Mini UNCG | G | C | 10 | G | 12 | G | 14 | cWW |
| 6 | HL_6TQB_001 | 6TQB | 0.3342 | 2 | Mini UNCG | B | A | 10 | A | 12 | U | 14 | cWW |
| 7 | HL_6TQA_003 | 6TQA | 0.3902 | 2 | Mini UNCG | G | A | 9 | A | 11 | U | 13 | cWW |
| 8 | HL_8SP9_002 | 8SP9 | 0.4470 | 2 | Mini UNCG | C | C | 67 | U | 69 | G | 71 | cWW |
| 9 | HL_4V9F_004 | 4V9F | 0.3822 | 2 | Mini UNCG related | 0 | U | 125 | A | 128 | A | 129 | cWW |
| 10 | HL_8C3A_072 | 8C3A | 0.5966 | 1 | Mini UNCG | 1 | C | 3315 | U | 3317 | G | 3318 | cWW |
| 11 | HL_4V9F_021 | 4V9F | 0.7512 | 2 | Mini UNCG | 0 | C | 712 | U | 714 | G | 716 | cWW |
| 12 | HL_4L8H_001 | 4L8H | 0.6307 | 2 | Mini UNCG | R | C | 9 | A | 11 | G | 13 | cWW |
| 13 | HL_4V88_192 | 4V88 | 0.6589 | 1 | Mini UNCG | A6 | C | 276 | U | 278 | G | 279 | cWW |
| 14 | HL_7A0S_017 | 7A0S | 0.6237 | 3 | Mini UNCG with extended bulge | X | C | 553 | U | 557 | G | 558 | cWW |
| 15 | HL_5J7L_169 | 5J7L | 0.5726 | 6 | Mini UNCG with extended bulge | DA | C | 1451 | U | 1458 | G | 1459 | cWW |
| 16 | HL_5U30_001 | 5U30 | 0.6327 | 1 | Mini UNCG | B | U | 4 | G | 6 | A | 7 | cWW |
| 17 | HL_5TBW_071 | 5TBW | 0.6440 | 1 | Mini UNCG | 1 | C | 3350 | U | 3352 | G | 3353 | cWW |
| 18 | HL_6CZR_089 | 6CZR | 0.8915 | 2 | Mini UNCG | 1a | G | 822 | C | 824 | C | 826 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGUG | 4 |
| CUUG | 3 |
| AUAUU | 2 |
| CAAAG | 1 |
| CAUUG | 1 |
| UCUAA | 1 |
| CUUUG | 1 |
| CUAAG | 1 |
| CUUAUG | 1 |
| CGACGGUUG | 1 |
| UAGA | 1 |
| GUCUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGU | 4 |
| UU | 3 |
| UAU | 2 |
| AAA | 1 |
| AUU | 1 |
| CUA | 1 |
| UUU | 1 |
| UAA | 1 |
| UUAU | 1 |
| GACGGUU | 1 |
| AG | 1 |
| UCU | 1 |
Release history
| Release | 3.87 |
|---|---|
| Date | 2024-08-14 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Mini UNCG (14)
- Mini UNCG related (2)
- Mini UNCG with extended bulge (2)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.05 | Avg 0.43 | Max 1.88
Coloring options: