Motif HL_69858.1 Version HL_69858.1 of this group appears in releases 3.87 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8J72_001 | 8J72 | 0.4169 | 2 | C | lncRNA Trincr1 | C | 4 | A | 7 | G | 8 | cWW | |
2 | HL_4ZLD_001 | 4ZLD | 0.0689 | 2 | B | RNA (17-mer) | C | 7 | G | 9 | G | 11 | cWW | |
3 | HL_4Z31_001 | 4Z31 | 0.0534 | 2 | E | RNA (15-mer) | C | 6 | G | 8 | G | 10 | cWW | |
4 | HL_4QIL_002 | 4QIL | 0.0000 | 2 | C | RNA (19-mer) | C | 8 | G | 10 | G | 12 | cWW | |
5 | HL_4QI2_003 | 4QI2 | 0.1174 | 2 | G | RNA (23-mer) | C | 10 | G | 12 | G | 14 | cWW | |
6 | HL_6TQB_001 | 6TQB | 0.3342 | 2 | B | RNA (19-mer) | A | 10 | A | 12 | U | 14 | cWW | |
7 | HL_6TQA_003 | 6TQA | 0.3902 | 2 | G | RNA (21-mer) | A | 9 | A | 11 | U | 13 | cWW | |
8 | HL_8SP9_002 | 8SP9 | 0.4470 | 2 | C | tRNA scaffold,CVB3 Cloverleaf RNA | C | 67 | U | 69 | G | 71 | cWW | |
9 | HL_4V9F_004 | 4V9F | 0.3822 | 2 | 0 | LSU rRNA | U | 125 | A | 128 | A | 129 | cWW | |
10 | HL_8C3A_072 | 8C3A | 0.5966 | 1 | 1 | LSU rRNA | C | 3315 | U | 3317 | G | 3318 | cWW | |
11 | HL_4V9F_021 | 4V9F | 0.7512 | 2 | 0 | LSU rRNA | C | 712 | U | 714 | G | 716 | cWW | |
12 | HL_4L8H_001 | 4L8H | 0.6307 | 2 | R | RNA operator hairpin | C | 9 | A | 11 | G | 13 | cWW | |
13 | HL_4V88_192 | 4V88 | 0.6589 | 1 | A6 | SSU rRNA | C | 276 | U | 278 | G | 279 | cWW | |
14 | HL_7A0S_017 | 7A0S | 0.6237 | 3 | X | LSU rRNA | C | 553 | U | 557 | G | 558 | cWW | |
15 | HL_5J7L_169 | 5J7L | 0.5726 | 6 | DA | LSU rRNA | C | 1451 | U | 1458 | G | 1459 | cWW | |
16 | HL_5U30_001 | 5U30 | 0.6327 | 1 | B | sgRNA | U | 4 | G | 6 | A | 7 | cWW | |
17 | HL_5TBW_071 | 5TBW | 0.6440 | 1 | 1 | LSU rRNA | C | 3350 | U | 3352 | G | 3353 | cWW | |
18 | HL_6CZR_089 | 6CZR | 0.8915 | 2 | 1a | SSU rRNA | G | 822 | C | 824 | C | 826 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUGUG | 4 |
CUUG | 3 |
AUAUU | 2 |
CAAAG | 1 |
CAUUG | 1 |
UCUAA | 1 |
CUUUG | 1 |
CUAAG | 1 |
CUUAUG | 1 |
CGACGGUUG | 1 |
UAGA | 1 |
GUCUC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGU | 4 |
UU | 3 |
UAU | 2 |
AAA | 1 |
AUU | 1 |
CUA | 1 |
UUU | 1 |
UAA | 1 |
UUAU | 1 |
GACGGUU | 1 |
AG | 1 |
UCU | 1 |
Release history
Release | 3.87 |
---|---|
Date | 2024-08-14 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.Coloring options: