RNA 3D Hub //

Motif HL_69858.1 Version HL_69858.1 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_8J72_0018J720.41692Mini UNCG relatedClncRNA Trincr1C4A7G8cWW
2 HL_4ZLD_0014ZLD0.06892Mini UNCGBRNA (17-mer)C7G9G11cWW
3 HL_4Z31_0014Z310.05342Mini UNCGERNA (15-mer)C6G8G10cWW
4 HL_4QIL_0024QIL0.00002Mini UNCGCRNA (19-mer)C8G10G12cWW
5 HL_4QI2_0034QI20.11742Mini UNCGGRNA (23-mer)C10G12G14cWW
6 HL_6TQB_0016TQB0.33422Mini UNCGBRNA (19-mer)A10A12U14cWW
7 HL_6TQA_0036TQA0.39022Mini UNCGGRNA (21-mer)A9A11U13cWW
8 HL_8SP9_0028SP90.44702Mini UNCGCEnterovirus 5' cloverleaf cis-acting replication elementC67U69G71cWW
9 HL_4V9F_0044V9F0.38222Mini UNCG related0 LSU rRNAU125A128A129cWW
10 HL_8C3A_0728C3A0.59661Mini UNCG1 LSU rRNAC3315U3317G3318cWW
11 HL_4V9F_0214V9F0.75122Mini UNCG0 LSU rRNAC712U714G716cWW
12 HL_4L8H_0014L8H0.63072Mini UNCGRRNA operator hairpinC9A11G13cWW
13 HL_4V88_1924V880.65891Mini UNCGA6 SSU rRNAC276U278G279cWW
14 HL_7A0S_0177A0S0.62373Mini UNCG with extended bulgeX LSU rRNAC553U557G558cWW
15 HL_5J7L_1695J7L0.57266Mini UNCG with extended bulgeDA LSU rRNAC1451U1458G1459cWW
16 HL_5U30_0015U300.63271Mini UNCGBsgRNAU4G6A7cWW
17 HL_5TBW_0715TBW0.64401Mini UNCG1 LSU rRNAC3350U3352G3353cWW
18 HL_6CZR_0896CZR0.89152Mini UNCG1a SSU rRNAG822C824C826cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUGUG4
CUUG3
AUAUU2
CAAAG1
CAUUG1
UCUAA1
CUUUG1
CUAAG1
CUUAUG1
CGACGGUUG1
UAGA1
GUCUC1
Non-Watson-Crick part of the motif
SequenceCounts
UGU4
UU3
UAU2
AAA1
AUU1
CUA1
UUU1
UAA1
UUAU1
GACGGUU1
AG1
UCU1

Release history

Release3.87
Date2024-08-14
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Mini UNCG (14)
  • Mini UNCG related (2)
  • Mini UNCG with extended bulge (2)
    • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.05 | Avg 0.43 | Max 1.88
    Help

    Coloring options:

    HL_8J72_001:HL_8J72_001 = 0HL_8J72_001:HL_4ZLD_001 = 0.3981HL_8J72_001:HL_4Z31_001 = 0.4077HL_8J72_001:HL_4QIL_002 = 0.4169HL_8J72_001:HL_4QI2_003 = 0.4706HL_8J72_001:HL_6TQB_001 = 0.4169HL_8J72_001:HL_6TQA_003 = 0.4321HL_8J72_001:HL_8SP9_002 = 0.4716HL_8J72_001:HL_4V9F_004 = 1.5397HL_8J72_001:HL_8C3A_072 = 0.4485HL_8J72_001:HL_4V9F_021 = 0.5958HL_8J72_001:HL_4L8H_001 = 0.5297HL_8J72_001:HL_4V88_192 = 0.5624HL_8J72_001:HL_7A0S_017 = 0.534HL_8J72_001:HL_5J7L_169 = 1.7785HL_8J72_001:HL_5U30_001 = 0.5276HL_8J72_001:HL_5TBW_071 = 0.5448HL_8J72_001:HL_6CZR_089 = 0.7356HL_4ZLD_001:HL_8J72_001 = 0.3981HL_4ZLD_001:HL_4ZLD_001 = 0HL_4ZLD_001:HL_4Z31_001 = 0.0588HL_4ZLD_001:HL_4QIL_002 = 0.0689HL_4ZLD_001:HL_4QI2_003 = 0.1182HL_4ZLD_001:HL_6TQB_001 = 0.308HL_4ZLD_001:HL_6TQA_003 = 0.3616HL_4ZLD_001:HL_8SP9_002 = 0.4031HL_4ZLD_001:HL_4V9F_004 = 0.357HL_4ZLD_001:HL_8C3A_072 = 0.5574HL_4ZLD_001:HL_4V9F_021 = 0.713HL_4ZLD_001:HL_4L8H_001 = 0.5977HL_4ZLD_001:HL_4V88_192 = 0.6288HL_4ZLD_001:HL_7A0S_017 = 0.5874HL_4ZLD_001:HL_5J7L_169 = 0.54HL_4ZLD_001:HL_5U30_001 = 0.6024HL_4ZLD_001:HL_5TBW_071 = 0.6091HL_4ZLD_001:HL_6CZR_089 = 0.8606HL_4Z31_001:HL_8J72_001 = 0.4077HL_4Z31_001:HL_4ZLD_001 = 0.0588HL_4Z31_001:HL_4Z31_001 = 0HL_4Z31_001:HL_4QIL_002 = 0.0534HL_4Z31_001:HL_4QI2_003 = 0.1246HL_4Z31_001:HL_6TQB_001 = 0.3154HL_4Z31_001:HL_6TQA_003 = 0.37HL_4Z31_001:HL_8SP9_002 = 0.4451HL_4Z31_001:HL_4V9F_004 = 0.3895HL_4Z31_001:HL_8C3A_072 = 0.5913HL_4Z31_001:HL_4V9F_021 = 0.7455HL_4Z31_001:HL_4L8H_001 = 0.6287HL_4Z31_001:HL_4V88_192 = 0.6569HL_4Z31_001:HL_7A0S_017 = 0.6171HL_4Z31_001:HL_5J7L_169 = 0.5733HL_4Z31_001:HL_5U30_001 = 0.6261HL_4Z31_001:HL_5TBW_071 = 0.6343HL_4Z31_001:HL_6CZR_089 = 0.888HL_4QIL_002:HL_8J72_001 = 0.4169HL_4QIL_002:HL_4ZLD_001 = 0.0689HL_4QIL_002:HL_4Z31_001 = 0.0534HL_4QIL_002:HL_4QIL_002 = 0HL_4QIL_002:HL_4QI2_003 = 0.1174HL_4QIL_002:HL_6TQB_001 = 0.3342HL_4QIL_002:HL_6TQA_003 = 0.3902HL_4QIL_002:HL_8SP9_002 = 0.447HL_4QIL_002:HL_4V9F_004 = 0.3822HL_4QIL_002:HL_8C3A_072 = 0.5966HL_4QIL_002:HL_4V9F_021 = 0.7512HL_4QIL_002:HL_4L8H_001 = 0.6307HL_4QIL_002:HL_4V88_192 = 0.6589HL_4QIL_002:HL_7A0S_017 = 0.6237HL_4QIL_002:HL_5J7L_169 = 0.5726HL_4QIL_002:HL_5U30_001 = 0.6327HL_4QIL_002:HL_5TBW_071 = 0.644HL_4QIL_002:HL_6CZR_089 = 0.8915HL_4QI2_003:HL_8J72_001 = 0.4706HL_4QI2_003:HL_4ZLD_001 = 0.1182HL_4QI2_003:HL_4Z31_001 = 0.1246HL_4QI2_003:HL_4QIL_002 = 0.1174HL_4QI2_003:HL_4QI2_003 = 0HL_4QI2_003:HL_6TQB_001 = 0.3124HL_4QI2_003:HL_6TQA_003 = 0.3735HL_4QI2_003:HL_8SP9_002 = 0.4202HL_4QI2_003:HL_4V9F_004 = 0.3822HL_4QI2_003:HL_8C3A_072 = 0.6178HL_4QI2_003:HL_4V9F_021 = 0.7632HL_4QI2_003:HL_4L8H_001 = 0.6369HL_4QI2_003:HL_4V88_192 = 0.6579HL_4QI2_003:HL_7A0S_017 = 0.6212HL_4QI2_003:HL_5J7L_169 = 0.5816HL_4QI2_003:HL_5U30_001 = 0.6526HL_4QI2_003:HL_5TBW_071 = 0.6632HL_4QI2_003:HL_6CZR_089 = 0.9222HL_6TQB_001:HL_8J72_001 = 0.4169HL_6TQB_001:HL_4ZLD_001 = 0.308HL_6TQB_001:HL_4Z31_001 = 0.3154HL_6TQB_001:HL_4QIL_002 = 0.3342HL_6TQB_001:HL_4QI2_003 = 0.3124HL_6TQB_001:HL_6TQB_001 = 0HL_6TQB_001:HL_6TQA_003 = 0.0919HL_6TQB_001:HL_8SP9_002 = 0.3241HL_6TQB_001:HL_4V9F_004 = 0.3084HL_6TQB_001:HL_8C3A_072 = 0.4732HL_6TQB_001:HL_4V9F_021 = 0.5944HL_6TQB_001:HL_4L8H_001 = 0.4527HL_6TQB_001:HL_4V88_192 = 0.4694HL_6TQB_001:HL_7A0S_017 = 0.4352HL_6TQB_001:HL_5J7L_169 = 0.441HL_6TQB_001:HL_5U30_001 = 0.5029HL_6TQB_001:HL_5TBW_071 = 0.5201HL_6TQB_001:HL_6CZR_089 = 0.7819HL_6TQA_003:HL_8J72_001 = 0.4321HL_6TQA_003:HL_4ZLD_001 = 0.3616HL_6TQA_003:HL_4Z31_001 = 0.37HL_6TQA_003:HL_4QIL_002 = 0.3902HL_6TQA_003:HL_4QI2_003 = 0.3735HL_6TQA_003:HL_6TQB_001 = 0.0919HL_6TQA_003:HL_6TQA_003 = 0HL_6TQA_003:HL_8SP9_002 = 0.3532HL_6TQA_003:HL_4V9F_004 = 0.343HL_6TQA_003:HL_8C3A_072 = 0.4427HL_6TQA_003:HL_4V9F_021 = 0.552HL_6TQA_003:HL_4L8H_001 = 0.4134HL_6TQA_003:HL_4V88_192 = 0.429HL_6TQA_003:HL_7A0S_017 = 0.3898HL_6TQA_003:HL_5J7L_169 = 0.4105HL_6TQA_003:HL_5U30_001 = 0.4537HL_6TQA_003:HL_5TBW_071 = 0.475HL_6TQA_003:HL_6CZR_089 = 0.7338HL_8SP9_002:HL_8J72_001 = 0.4716HL_8SP9_002:HL_4ZLD_001 = 0.4031HL_8SP9_002:HL_4Z31_001 = 0.4451HL_8SP9_002:HL_4QIL_002 = 0.447HL_8SP9_002:HL_4QI2_003 = 0.4202HL_8SP9_002:HL_6TQB_001 = 0.3241HL_8SP9_002:HL_6TQA_003 = 0.3532HL_8SP9_002:HL_8SP9_002 = 0HL_8SP9_002:HL_4V9F_004 = 0.2405HL_8SP9_002:HL_8C3A_072 = 0.4067HL_8SP9_002:HL_4V9F_021 = 0.5166HL_8SP9_002:HL_4L8H_001 = 0.3936HL_8SP9_002:HL_4V88_192 = 0.4487HL_8SP9_002:HL_7A0S_017 = 0.4332HL_8SP9_002:HL_5J7L_169 = 0.3991HL_8SP9_002:HL_5U30_001 = 0.5226HL_8SP9_002:HL_5TBW_071 = 0.5316HL_8SP9_002:HL_6CZR_089 = 0.754HL_4V9F_004:HL_8J72_001 = 1.5397HL_4V9F_004:HL_4ZLD_001 = 0.357HL_4V9F_004:HL_4Z31_001 = 0.3895HL_4V9F_004:HL_4QIL_002 = 0.3822HL_4V9F_004:HL_4QI2_003 = 0.3822HL_4V9F_004:HL_6TQB_001 = 0.3084HL_4V9F_004:HL_6TQA_003 = 0.343HL_4V9F_004:HL_8SP9_002 = 0.2405HL_4V9F_004:HL_4V9F_004 = 0HL_4V9F_004:HL_8C3A_072 = 0.3779HL_4V9F_004:HL_4V9F_021 = 0.5146HL_4V9F_004:HL_4L8H_001 = 0.3891HL_4V9F_004:HL_4V88_192 = 0.4179HL_4V9F_004:HL_7A0S_017 = 0.4114HL_4V9F_004:HL_5J7L_169 = 1.881HL_4V9F_004:HL_5U30_001 = 0.4737HL_4V9F_004:HL_5TBW_071 = 0.5058HL_4V9F_004:HL_6CZR_089 = 0.7188HL_8C3A_072:HL_8J72_001 = 0.4485HL_8C3A_072:HL_4ZLD_001 = 0.5574HL_8C3A_072:HL_4Z31_001 = 0.5913HL_8C3A_072:HL_4QIL_002 = 0.5966HL_8C3A_072:HL_4QI2_003 = 0.6178HL_8C3A_072:HL_6TQB_001 = 0.4732HL_8C3A_072:HL_6TQA_003 = 0.4427HL_8C3A_072:HL_8SP9_002 = 0.4067HL_8C3A_072:HL_4V9F_004 = 0.3779HL_8C3A_072:HL_8C3A_072 = 0HL_8C3A_072:HL_4V9F_021 = 0.1756HL_8C3A_072:HL_4L8H_001 = 0.1687HL_8C3A_072:HL_4V88_192 = 0.2208HL_8C3A_072:HL_7A0S_017 = 0.1979HL_8C3A_072:HL_5J7L_169 = 0.158HL_8C3A_072:HL_5U30_001 = 0.1929HL_8C3A_072:HL_5TBW_071 = 0.1926HL_8C3A_072:HL_6CZR_089 = 0.3649HL_4V9F_021:HL_8J72_001 = 0.5958HL_4V9F_021:HL_4ZLD_001 = 0.713HL_4V9F_021:HL_4Z31_001 = 0.7455HL_4V9F_021:HL_4QIL_002 = 0.7512HL_4V9F_021:HL_4QI2_003 = 0.7632HL_4V9F_021:HL_6TQB_001 = 0.5944HL_4V9F_021:HL_6TQA_003 = 0.552HL_4V9F_021:HL_8SP9_002 = 0.5166HL_4V9F_021:HL_4V9F_004 = 0.5146HL_4V9F_021:HL_8C3A_072 = 0.1756HL_4V9F_021:HL_4V9F_021 = 0HL_4V9F_021:HL_4L8H_001 = 0.1918HL_4V9F_021:HL_4V88_192 = 0.2193HL_4V9F_021:HL_7A0S_017 = 0.2259HL_4V9F_021:HL_5J7L_169 = 0.2485HL_4V9F_021:HL_5U30_001 = 0.2314HL_4V9F_021:HL_5TBW_071 = 0.2049HL_4V9F_021:HL_6CZR_089 = 0.2818HL_4L8H_001:HL_8J72_001 = 0.5297HL_4L8H_001:HL_4ZLD_001 = 0.5977HL_4L8H_001:HL_4Z31_001 = 0.6287HL_4L8H_001:HL_4QIL_002 = 0.6307HL_4L8H_001:HL_4QI2_003 = 0.6369HL_4L8H_001:HL_6TQB_001 = 0.4527HL_4L8H_001:HL_6TQA_003 = 0.4134HL_4L8H_001:HL_8SP9_002 = 0.3936HL_4L8H_001:HL_4V9F_004 = 0.3891HL_4L8H_001:HL_8C3A_072 = 0.1687HL_4L8H_001:HL_4V9F_021 = 0.1918HL_4L8H_001:HL_4L8H_001 = 0HL_4L8H_001:HL_4V88_192 = 0.1059HL_4L8H_001:HL_7A0S_017 = 0.1498HL_4L8H_001:HL_5J7L_169 = 0.1421HL_4L8H_001:HL_5U30_001 = 0.2123HL_4L8H_001:HL_5TBW_071 = 0.2525HL_4L8H_001:HL_6CZR_089 = 0.4145HL_4V88_192:HL_8J72_001 = 0.5624HL_4V88_192:HL_4ZLD_001 = 0.6288HL_4V88_192:HL_4Z31_001 = 0.6569HL_4V88_192:HL_4QIL_002 = 0.6589HL_4V88_192:HL_4QI2_003 = 0.6579HL_4V88_192:HL_6TQB_001 = 0.4694HL_4V88_192:HL_6TQA_003 = 0.429HL_4V88_192:HL_8SP9_002 = 0.4487HL_4V88_192:HL_4V9F_004 = 0.4179HL_4V88_192:HL_8C3A_072 = 0.2208HL_4V88_192:HL_4V9F_021 = 0.2193HL_4V88_192:HL_4L8H_001 = 0.1059HL_4V88_192:HL_4V88_192 = 0HL_4V88_192:HL_7A0S_017 = 0.111HL_4V88_192:HL_5J7L_169 = 0.1444HL_4V88_192:HL_5U30_001 = 0.2038HL_4V88_192:HL_5TBW_071 = 0.2556HL_4V88_192:HL_6CZR_089 = 0.4133HL_7A0S_017:HL_8J72_001 = 0.534HL_7A0S_017:HL_4ZLD_001 = 0.5874HL_7A0S_017:HL_4Z31_001 = 0.6171HL_7A0S_017:HL_4QIL_002 = 0.6237HL_7A0S_017:HL_4QI2_003 = 0.6212HL_7A0S_017:HL_6TQB_001 = 0.4352HL_7A0S_017:HL_6TQA_003 = 0.3898HL_7A0S_017:HL_8SP9_002 = 0.4332HL_7A0S_017:HL_4V9F_004 = 0.4114HL_7A0S_017:HL_8C3A_072 = 0.1979HL_7A0S_017:HL_4V9F_021 = 0.2259HL_7A0S_017:HL_4L8H_001 = 0.1498HL_7A0S_017:HL_4V88_192 = 0.111HL_7A0S_017:HL_7A0S_017 = 0HL_7A0S_017:HL_5J7L_169 = 0.1356HL_7A0S_017:HL_5U30_001 = 0.1706HL_7A0S_017:HL_5TBW_071 = 0.2063HL_7A0S_017:HL_6CZR_089 = 0.4081HL_5J7L_169:HL_8J72_001 = 1.7785HL_5J7L_169:HL_4ZLD_001 = 0.54HL_5J7L_169:HL_4Z31_001 = 0.5733HL_5J7L_169:HL_4QIL_002 = 0.5726HL_5J7L_169:HL_4QI2_003 = 0.5816HL_5J7L_169:HL_6TQB_001 = 0.441HL_5J7L_169:HL_6TQA_003 = 0.4105HL_5J7L_169:HL_8SP9_002 = 0.3991HL_5J7L_169:HL_4V9F_004 = 1.881HL_5J7L_169:HL_8C3A_072 = 0.158HL_5J7L_169:HL_4V9F_021 = 0.2485HL_5J7L_169:HL_4L8H_001 = 0.1421HL_5J7L_169:HL_4V88_192 = 0.1444HL_5J7L_169:HL_7A0S_017 = 0.1356HL_5J7L_169:HL_5J7L_169 = 0HL_5J7L_169:HL_5U30_001 = 0.1783HL_5J7L_169:HL_5TBW_071 = 0.2443HL_5J7L_169:HL_6CZR_089 = 0.4193HL_5U30_001:HL_8J72_001 = 0.5276HL_5U30_001:HL_4ZLD_001 = 0.6024HL_5U30_001:HL_4Z31_001 = 0.6261HL_5U30_001:HL_4QIL_002 = 0.6327HL_5U30_001:HL_4QI2_003 = 0.6526HL_5U30_001:HL_6TQB_001 = 0.5029HL_5U30_001:HL_6TQA_003 = 0.4537HL_5U30_001:HL_8SP9_002 = 0.5226HL_5U30_001:HL_4V9F_004 = 0.4737HL_5U30_001:HL_8C3A_072 = 0.1929HL_5U30_001:HL_4V9F_021 = 0.2314HL_5U30_001:HL_4L8H_001 = 0.2123HL_5U30_001:HL_4V88_192 = 0.2038HL_5U30_001:HL_7A0S_017 = 0.1706HL_5U30_001:HL_5J7L_169 = 0.1783HL_5U30_001:HL_5U30_001 = 0HL_5U30_001:HL_5TBW_071 = 0.1401HL_5U30_001:HL_6CZR_089 = 0.3214HL_5TBW_071:HL_8J72_001 = 0.5448HL_5TBW_071:HL_4ZLD_001 = 0.6091HL_5TBW_071:HL_4Z31_001 = 0.6343HL_5TBW_071:HL_4QIL_002 = 0.644HL_5TBW_071:HL_4QI2_003 = 0.6632HL_5TBW_071:HL_6TQB_001 = 0.5201HL_5TBW_071:HL_6TQA_003 = 0.475HL_5TBW_071:HL_8SP9_002 = 0.5316HL_5TBW_071:HL_4V9F_004 = 0.5058HL_5TBW_071:HL_8C3A_072 = 0.1926HL_5TBW_071:HL_4V9F_021 = 0.2049HL_5TBW_071:HL_4L8H_001 = 0.2525HL_5TBW_071:HL_4V88_192 = 0.2556HL_5TBW_071:HL_7A0S_017 = 0.2063HL_5TBW_071:HL_5J7L_169 = 0.2443HL_5TBW_071:HL_5U30_001 = 0.1401HL_5TBW_071:HL_5TBW_071 = 0HL_5TBW_071:HL_6CZR_089 = 0.2905HL_6CZR_089:HL_8J72_001 = 0.7356HL_6CZR_089:HL_4ZLD_001 = 0.8606HL_6CZR_089:HL_4Z31_001 = 0.888HL_6CZR_089:HL_4QIL_002 = 0.8915HL_6CZR_089:HL_4QI2_003 = 0.9222HL_6CZR_089:HL_6TQB_001 = 0.7819HL_6CZR_089:HL_6TQA_003 = 0.7338HL_6CZR_089:HL_8SP9_002 = 0.754HL_6CZR_089:HL_4V9F_004 = 0.7188HL_6CZR_089:HL_8C3A_072 = 0.3649HL_6CZR_089:HL_4V9F_021 = 0.2818HL_6CZR_089:HL_4L8H_001 = 0.4145HL_6CZR_089:HL_4V88_192 = 0.4133HL_6CZR_089:HL_7A0S_017 = 0.4081HL_6CZR_089:HL_5J7L_169 = 0.4193HL_6CZR_089:HL_5U30_001 = 0.3214HL_6CZR_089:HL_5TBW_071 = 0.2905HL_6CZR_089:HL_6CZR_089 = 0HL_8J72_001HL_4ZLD_001HL_4Z31_001HL_4QIL_002HL_4QI2_003HL_6TQB_001HL_6TQA_003HL_8SP9_002HL_4V9F_004HL_8C3A_072HL_4V9F_021HL_4L8H_001HL_4V88_192HL_7A0S_017HL_5J7L_169HL_5U30_001HL_5TBW_071HL_6CZR_089Discrepancy0.000.501.001.50
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