Motif HL_73266.5 Version HL_73266.5 of this group appears in releases 3.62 to 3.79

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-8	3-7	4-5
1	HL_7KVT_002	7KVT	0.1686	B	Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions	G	55	C	56	C	57	U	58	U	59	A	60	A	61	A	62	C	63	cWW		ntSW	cSH
2	HL_1Y27_003	1Y27	0.0672	X	Purine riboswitch	A	59	C	60	C	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		cSW	cSH
3	HL_4FEN_003	4FEN	0.0000	B	A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain	A	59	C	60	C	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		cSW	cSH
4	HL_3LA5_003	3LA5	0.0768	A	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	cSH
5	HL_5SWD_006	5SWD	0.0835	B	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	cSH
6	HL_4LX6_003	4LX6	0.1167	A	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	ncSH
7	HL_1Y26_003	1Y26	0.1788	X	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW
8	HL_4XNR_003	4XNR	0.1713	X	Purine riboswitch	G	59	C	60	C	61	U	62	U	63	A	64	A	65	A	66	C	67	cWW		cSW	cSH
9	HL_3RKF_009	3RKF	0.2069	C	Guanine riboswitch	A	59	C	60	U	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		ncSW	cSH
10	HL_5KPY_002	5KPY	0.2018	A	5-hydroxytryptophan RNA aptamer	A	59	C	60	C	61	G	62	U	63	A	64	A	65	A	66	U	67	cWW		cSW	cSH
11	HL_6MJ0_006	6MJ0	0.7467	B	tRNA-like 3' UTR element	U	12	C	13	U	14	U	15	U	16	A	17	A	18	A	19	A	20	cWW	cSW	ncSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GCCUUAAAC	6
ACCGUAAAU	3
ACUGUAAAU	1
UCUUUAAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCUUAAA	6
CCGUAAA	3
CUGUAAA	1
CUUUAAA	1

Release history

Release	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79
Date	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08	2023-12-06	2024-01-03	2024-01-03
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (11)
Basepair signature: cWW-R-cSW-R-cSH
Heat map statistics: Min 0.07 | Avg 0.23 | Max 0.75

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__474364632896452__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__474364632896452__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/HL_73266.5","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__474364632896452__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"474364632896452","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/HL_73266.5"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__474364632896452__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started

Script completed

Jmol script terminated

script 3 started

Script completed

Jmol script terminated

script 4 started

Script completed

Jmol script terminated

Coloring options: Nucleotide numbers

Motif HL_73266.5 Version HL_73266.5 of this group appears in releases 3.62 to 3.79 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_73266.5 Version HL_73266.5 of this group appears in releases 3.62 to 3.79

Download

Csv

Json