Motif HL_75759.3 Version HL_75759.3 of this group appears in releases 1.5 to 1.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3V2F_009 | 3V2F | 0.4136 | 1 | A | 23S Ribosomal RNA | C | 271|||J | U | 271|||L | G | 271|||M | cWW | |
| 2 | HL_3U5H_072 | 3U5H | 0.3131 | 1 | 5 | 25S rRNA | C | 3350 | U | 3352 | G | 3353 | cWW | |
| 3 | HL_3U5F_007 | 3U5F | 0.1947 | 1 | 6 | 18S rRNA | C | 276 | U | 278 | G | 279 | cWW | |
| 4 | HL_1S72_041 | 1S72 | 0.1816 | 2 | Mini UNCG (H) | 0 | LSU rRNA | C | 1651 | U | 1654 | G | 1655 | cWW |
| 5 | HL_3U5H_040 | 3U5H | 0.1435 | 2 | 5 | 25S rRNA | C | 1792 | U | 1795 | G | 1796 | cWW | |
| 6 | HL_2F8K_001 | 2F8K | 0.1012 | 1 | Mini UNCG | B | RNA (16-mer) | U | 6 | G | 8 | A | 9 | cWW |
| 7 | HL_2QBG_041 | 2QBG | 0.0000 | 1 | B | 23S rRNA | C | 1565 | G | 1567 | G | 1568 | cWW | |
| 8 | HL_3V2F_037 | 3V2F | 0.0927 | 1 | A | 23S Ribosomal RNA | C | 1565 | A | 1567 | G | 1568 | cWW | |
| 9 | HL_4IOA_038 | 4IOA | 0.1444 | 1 | Mini UNCG (H) | X | LSU rRNA | C | 1581 | A | 1583 | G | 1584 | cWW |
| 10 | HL_4A1B_039 | 4A1B | 0.2701 | 2 | 1 | 26S RRNA | C | 1818 | U | 1821 | G | 1822 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUG | 3 |
| CAAG | 2 |
| CCAUG | 1 |
| CCGUG | 1 |
| UUGA | 1 |
| CAGG | 1 |
| CCUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU | 3 |
| AA | 2 |
| CAU | 1 |
| CGU | 1 |
| UG | 1 |
| AG | 1 |
| CUU | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 |
|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_75759.3 | Only in the parent motif |
|---|---|---|---|
| HL_75759.2 Compare | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 | HL_2F8K_001 | HL_3U5H_069 |
| HL_19905.2 Compare | HL_2F8K_001 | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 | HL_2AW7_002, HL_2QBG_045 |
Children motifs
| Child motif | Common motif instances | Only in HL_75759.3 | Only in the child motif |
|---|---|---|---|
| HL_75759.4 Compare | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_2F8K_001, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 | HL_4OO8_002 |
- Annotations
-
- (7)
- Mini UNCG (H) (2)
- Mini UNCG (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.09 | Avg 0.23 | Max 0.47
Coloring options: