Motif HL_75759.2 Version HL_75759.2 of this group appears in releases 1.1 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3V2F_009 | 3V2F | 0.3317 | 1 | A | 23S Ribosomal RNA | C | 271|||J | U | 271|||L | G | 271|||M | cWW | |
| 2 | HL_3U5H_072 | 3U5H | 0.2802 | 1 | 5 | 25S rRNA | C | 3350 | U | 3352 | G | 3353 | cWW | |
| 3 | HL_3U5H_069 | 3U5H | 0.2817 | 1 | 5 | 25S rRNA | C | 3194 | U | 3196 | G | 3197 | cWW | |
| 4 | HL_3U5F_007 | 3U5F | 0.1643 | 1 | 6 | 18S rRNA | C | 276 | U | 278 | G | 279 | cWW | |
| 5 | HL_1S72_041 | 1S72 | 0.0000 | 2 | Mini UNCG (H) | 0 | LSU rRNA | C | 1651 | U | 1654 | G | 1655 | cWW |
| 6 | HL_3U5H_040 | 3U5H | 0.1579 | 2 | 5 | 25S rRNA | C | 1792 | U | 1795 | G | 1796 | cWW | |
| 7 | HL_2QBG_041 | 2QBG | 0.1816 | 1 | B | 23S rRNA | C | 1565 | G | 1567 | G | 1568 | cWW | |
| 8 | HL_3V2F_037 | 3V2F | 0.1978 | 1 | A | 23S Ribosomal RNA | C | 1565 | A | 1567 | G | 1568 | cWW | |
| 9 | HL_4IOA_038 | 4IOA | 0.1900 | 1 | Mini UNCG (H) | X | LSU rRNA | C | 1581 | A | 1583 | G | 1584 | cWW |
| 10 | HL_4A1B_039 | 4A1B | 0.2037 | 2 | 1 | 26S RRNA | C | 1818 | U | 1821 | G | 1822 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUG | 4 |
| CAAG | 2 |
| CCAUG | 1 |
| CCGUG | 1 |
| CAGG | 1 |
| CCUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU | 4 |
| AA | 2 |
| CAU | 1 |
| CGU | 1 |
| AG | 1 |
| CUU | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|
| Date | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_75759.2 | Only in the parent motif |
|---|---|---|---|
| HL_75759.1 Compare | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_3U5H_072 | HL_4IOA_038, HL_3U5H_069 | HL_2F8K_001, HL_2ZJR_039 |
| HL_95423.2 Compare | HL_3U5H_069 | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 | HL_1FJG_018, HL_1ZBH_001, HL_4HXH_001, HL_3U5H_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_75759.2 | Only in the child motif |
|---|---|---|---|
| HL_75759.3 Compare | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 | HL_3U5H_069 | HL_2F8K_001 |
| HL_55718.1 Compare | HL_3U5H_069 | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 | HL_1FJG_018, HL_1ZBH_001, HL_3U5H_004 |
- Annotations
-
- (8)
- Mini UNCG (H) (2)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.09 | Avg 0.24 | Max 0.47
Coloring options: