Motif HL_76539.1 Version HL_76539.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_188 | 4V88 | 0.4511 | 4 | Other HL | A6 | SSU rRNA | G | 154 | U | 155 | C | 160 | cWW |
| 2 | HL_4ZNP_001 | 4ZNP | 0.4025 | 3 | A | pfI Riboswitch | G | 26 | G | 27 | C | 31 | cWW | |
| 3 | HL_7A0S_044 | 7A0S | 0.3243 | 2 | X | LSU rRNA | C | 1743 | G | 1744 | G | 1747 | cWW | |
| 4 | HL_4V9F_046 | 4V9F | 0.3222 | 2 | 0 | LSU rRNA | C | 1808 | G | 1809 | G | 1812 | cWW | |
| 5 | HL_5J7L_177 | 5J7L | 0.3528 | 2 | DA | LSU rRNA | C | 1752 | G | 1753 | G | 1756 | cWW | |
| 6 | HL_7RQB_044 | 7RQB | 0.3407 | 2 | 1A | LSU rRNA | C | 1752 | G | 1753 | G | 1756 | cWW | |
| 7 | HL_4WF9_042 | 4WF9 | 0.3057 | 2 | X | LSU rRNA | C | 1779 | G | 1780 | G | 1783 | cWW | |
| 8 | HL_7QQX_001 | 7QQX | 0.4068 | 3 | A | FANCF sgRNA | A | 32 | G | 33 | U | 37 | cWW | |
| 9 | HL_4QK9_001 | 4QK9 | 0.3064 | 3 | Other HL | A | C-di-AMP riboswitch | C | 14 | U | 15 | G | 19 | cWW |
| 10 | HL_1U6B_004 | 1U6B | 0.3076 | 3 | GNRA related | B | 197-MER | C | 153 | A | 154 | G | 158 | cWW |
| 11 | HL_5TBW_033 | 5TBW | 0.2816 | 3 | GNRA related | 1 | LSU rRNA | G | 1544 | A | 1545 | U | 1549 | cWW |
| 12 | HL_7U4A_001 | 7U4A | 0.0000 | 3 | A | RNA (70-MER) | C | 13 | G | 14 | G | 18 | cWW | |
| 13 | HL_3IVK_002 | 3IVK | 0.2667 | 2 | M | class I ligase product | C | 40 | G | 41 | G | 44 | cWW | |
| 14 | HL_3HHN_007 | 3HHN | 0.2741 | 2 | E | Class I ligase ribozyme, self-ligation product | C | 40 | G | 41 | G | 44 | cWW | |
| 15 | HL_5MGA_001 | 5MGA | 0.5230 | 3 | B | RNA (40-MER) | C | -11 | U | -10 | G | -6 | cWW | |
| 16 | HL_5NFV_001 | 5NFV | 0.2794 | 3 | B | pre-crRNA | C | -10 | U | -9 | G | -5 | cWW | |
| 17 | HL_5XH7_001 | 5XH7 | 0.6150 | 3 | B | crRNA | C | -11 | U | -10 | G | -6 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAG | 4 |
| CGAAG | 3 |
| CUGUUG | 2 |
| GUAAUUC | 1 |
| GGAAAC | 1 |
| AGAAAU | 1 |
| CUGAAG | 1 |
| CAAACG | 1 |
| GAAGCU | 1 |
| CGAAAG | 1 |
| CUCUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA | 4 |
| GAAA | 3 |
| GAA | 3 |
| UGUU | 2 |
| UAAUU | 1 |
| UGAA | 1 |
| AAAC | 1 |
| AAGC | 1 |
| UCUU | 1 |
- Annotations
-
- GNRA related (2)
- Other HL (2)
- Basepair signature
- cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.35 | Max 0.99
Coloring options: