Motif HL_62228.1 Version HL_62228.1 of this group appears in releases 0.3 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_025 | 2QBG | 0.7387 | 1 | B | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 784 | G | 785 | cWW | ntSH | |
| 2 | HL_2ZJR_023 | 2ZJR | 0.5354 | 1 | UNCG variation (H) | X | LSU rRNA | U | 792 | G | 793 | A | 795 | A | 796 | A | 797 | G | 798 | cWW | ncSW |
| 3 | HL_3V2F_024 | 3V2F | 0.0000 | 1 | A | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | A | 784 | G | 785 | cWW | tSW | |
| 4 | HL_1S72_025 | 1S72 | 0.1942 | 1 | 0 | LSU rRNA | U | 872 | G | 873 | A | 875 | A | 876 | G | 877 | G | 878 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGG | 2 |
| UGAAAAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAG | 2 |
| GAAAA | 2 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_62228.1 | Only in the parent motif |
|---|---|---|---|
| HL_77942.1 Compare | HL_2QBG_025, HL_2ZJR_023 | HL_3V2F_024, HL_1S72_025 | HL_2XZM_004, HL_3PYO_024, HL_2ZJR_007 |
| HL_60345.1 Compare | HL_1S72_025 | HL_3V2F_024, HL_2QBG_025, HL_2ZJR_023 | HL_3DH3_006, HL_3DH3_004, HL_3DH3_003, HL_3DH3_001 |
Children motifs
| Child motif | Common motif instances | Only in HL_62228.1 | Only in the child motif |
|---|---|---|---|
| HL_62228.2 Compare | HL_3V2F_024, HL_1S72_025, HL_2QBG_025 | HL_2ZJR_023 | HL_4IOA_023 |
- Annotations
-
- (3)
- UNCG variation (H) (1)
- Basepair signature
- cWW-R-tSW-R
- Heat map statistics
- Min 0.19 | Avg 0.41 | Max 0.74
Coloring options: