Motif HL_78347.1 Version HL_78347.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4Z7K_001 | 4Z7K | 0.8111 | 6 | C | RNA/DNA Hybrid (31-MER) | C | 17 | A | 18 | A | 19 | A | 21 | A | 27 | G | 28 | cWW | |||
| 2 | HL_4Z7L_003 | 4Z7L | 0.7470 | 6 | I | RNA (14-mer) | C | 17 | A | 18 | A | 19 | A | 21 | A | 27 | G | 28 | cWW | |||
| 3 | HL_6WBR_004 | 6WBR | 0.3977 | 3 | B | RNA (94-MER) | C | 55 | C | 56 | U | 57 | G | 60 | G | 62 | G | 63 | cWW | |||
| 4 | HL_1FFY_002 | 1FFY | 0.0000 | 3 | T | ISOLEUCYL-TRNA | C | 31 | C | 32 | U | 33 | U | 36 | A | 38 | G | 39 | cWW | ncWW | ntSW | |
| 5 | HL_1QU2_002 | 1QU2 | 0.0002 | 3 | T | tRNA | C | 31 | C | 32 | U | 33 | U | 36 | A | 38 | G | 39 | cWW | ncWW | ntSW | |
| 6 | HL_3DIL_004 | 3DIL | 0.4966 | 0 | A | RNA (174-MER) | G | 149 | G | 150 | U | 151 | C | 152 | U | 153 | C | 154 | cWW | ncSW | ||
| 7 | HL_8C3A_195 | 8C3A | 0.6737 | 0 | CM | SSU rRNA | U | 188 | G | 189 | U | 190 | U | 191 | U | 192 | G | 193 | cWW | |||
| 8 | HL_1N78_001 | 1N78 | 0.8924 | 4 | C | tRNA(Glu) | U | 513 | A | 514 | G | 515 | U | 520 | A | 521 | G | 522 | cWW | cWS | ntSH | |
| 9 | HL_2DER_004 | 2DER | 0.6459 | 5 | D | tRNA | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW | |
| 10 | HL_5HR6_001 | 5HR6 | 0.6364 | 5 | C | tRNA | U | 12 | A | 13 | G | 14 | C | 19 | A | 21 | G | 22 | cWW | cWS | tSW | |
| 11 | HL_5HR7_004 | 5HR7 | 0.6439 | 5 | D | tRNA | U | 13 | A | 14 | G | 15 | C | 20 | A | 21 | G | 22 | cWW | cWS | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGAGGCCCAG | 3 |
| CAAAAUAACAAG | 2 |
| CCUGAUAAG | 2 |
| CCUUCGUGG | 1 |
| GGUCUC | 1 |
| UGUUUG | 1 |
| UAGCGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAGGCCCA | 3 |
| AAAAUAACAA | 2 |
| CUGAUAA | 2 |
| CUUCGUG | 1 |
| GUCU | 1 |
| GUUU | 1 |
| AGCGGUUA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.60 | Max 0.97
Coloring options: